Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0184 and DvMF_0185 are separated by 57 nucleotides DvMF_0185 and DvMF_0186 are separated by 84 nucleotides DvMF_0186 and DvMF_0187 are separated by 174 nucleotides
DvMF_0184: DvMF_0184 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 200,775 to 202,466
_0184
DvMF_0185: DvMF_0185 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit (RefSeq), at 202,524 to 203,375
_0185
DvMF_0186: DvMF_0186 - hypothetical protein (RefSeq), at 203,460 to 203,807
_0186
DvMF_0187: DvMF_0187 - hypothetical protein (RefSeq), at 203,982 to 204,512
_0187
Position (kb) 202
203
204 Strain fitness (log2 ratio) -1
0
1 at 201.782 kb on - strand, within DvMF_0184 at 202.138 kb on - strand, within DvMF_0184 at 202.261 kb on + strand, within DvMF_0184 at 202.279 kb on - strand, within DvMF_0184 at 202.279 kb on - strand, within DvMF_0184 at 202.295 kb on + strand, within DvMF_0184 at 202.295 kb on + strand, within DvMF_0184 at 202.303 kb on - strand at 202.407 kb on + strand at 202.461 kb on + strand at 202.558 kb on - strand at 202.747 kb on + strand, within DvMF_0185 at 202.981 kb on - strand, within DvMF_0185 at 203.371 kb on - strand at 203.548 kb on + strand, within DvMF_0186 at 203.573 kb on + strand, within DvMF_0186 at 203.573 kb on - strand, within DvMF_0186 at 203.603 kb on + strand, within DvMF_0186 at 203.783 kb on + strand at 203.951 kb on - strand at 204.129 kb on - strand, within DvMF_0187 at 204.306 kb on - strand, within DvMF_0187
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml remove 201,782 - DvMF_0184 0.60 -0.5 202,138 - DvMF_0184 0.81 -1.0 202,261 + DvMF_0184 0.88 -0.3 202,279 - DvMF_0184 0.89 -0.3 202,279 - DvMF_0184 0.89 -0.2 202,295 + DvMF_0184 0.90 -1.5 202,295 + DvMF_0184 0.90 -0.2 202,303 - -0.4 202,407 + -0.4 202,461 + -1.2 202,558 - -0.0 202,747 + DvMF_0185 0.26 -0.5 202,981 - DvMF_0185 0.54 -0.8 203,371 - -0.5 203,548 + DvMF_0186 0.25 -0.3 203,573 + DvMF_0186 0.32 -0.5 203,573 - DvMF_0186 0.32 -1.1 203,603 + DvMF_0186 0.41 -0.3 203,783 + -0.6 203,951 - -0.1 204,129 - DvMF_0187 0.28 -0.7 204,306 - DvMF_0187 0.61 -0.7
Or see this region's nucleotide sequence