Experiment: acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0564 and Shew_0565 overlap by 8 nucleotides Shew_0565 and Shew_0566 are separated by 92 nucleotides Shew_0566 and Shew_0567 are separated by 20 nucleotides
Shew_0564: Shew_0564 - DNA mismatch repair protein MutL (RefSeq), at 639,265 to 641,160
_0564
Shew_0565: Shew_0565 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 641,153 to 642,079
_0565
Shew_0566: Shew_0566 - RNA chaperone Hfq (RefSeq), at 642,172 to 642,450
_0566
Shew_0567: Shew_0567 - GTP-binding protein, HSR1-related (RefSeq), at 642,471 to 643,769
_0567
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1 at 640.178 kb on + strand, within Shew_0564 at 640.186 kb on - strand, within Shew_0564 at 640.225 kb on - strand, within Shew_0564 at 640.519 kb on + strand, within Shew_0564 at 640.586 kb on - strand, within Shew_0564 at 640.643 kb on + strand, within Shew_0564 at 640.699 kb on + strand, within Shew_0564 at 641.242 kb on + strand at 641.590 kb on + strand, within Shew_0565 at 641.717 kb on + strand, within Shew_0565 at 641.768 kb on + strand, within Shew_0565 at 641.768 kb on + strand, within Shew_0565 at 641.987 kb on + strand at 642.371 kb on + strand, within Shew_0566 at 642.499 kb on + strand at 642.504 kb on + strand at 642.538 kb on + strand at 642.839 kb on + strand, within Shew_0567
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 25 mM remove 640,178 + Shew_0564 0.48 +0.3 640,186 - Shew_0564 0.49 +0.5 640,225 - Shew_0564 0.51 -0.3 640,519 + Shew_0564 0.66 -0.0 640,586 - Shew_0564 0.70 +0.4 640,643 + Shew_0564 0.73 -0.1 640,699 + Shew_0564 0.76 +0.3 641,242 + -0.2 641,590 + Shew_0565 0.47 +0.8 641,717 + Shew_0565 0.61 +0.1 641,768 + Shew_0565 0.66 -2.6 641,768 + Shew_0565 0.66 -0.9 641,987 + -0.7 642,371 + Shew_0566 0.71 -1.1 642,499 + -0.5 642,504 + +0.1 642,538 + -0.6 642,839 + Shew_0567 0.28 -0.9
Or see this region's nucleotide sequence