Experiment: acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0436 and Shew_0437 are separated by 133 nucleotides Shew_0437 and Shew_0438 are separated by 48 nucleotides Shew_0438 and Shew_0439 are separated by 107 nucleotides Shew_0439 and Shew_0440 are separated by 8 nucleotides
Shew_0436: Shew_0436 - diguanylate cyclase/phosphodiesterase (RefSeq), at 486,271 to 488,043
_0436
Shew_0437: Shew_0437 - hypothetical protein (RefSeq), at 488,177 to 488,488
_0437
Shew_0438: Shew_0438 - GumN family protein (RefSeq), at 488,537 to 489,421
_0438
Shew_0439: Shew_0439 - CheD, stimulates methylation of MCP proteins (RefSeq), at 489,529 to 490,161
_0439
Shew_0440: Shew_0440 - methyltransferase type 12 (RefSeq), at 490,170 to 491,024
_0440
Position (kb) 488
489
490 Strain fitness (log2 ratio) -1
0
1 at 487.897 kb on - strand at 487.929 kb on - strand at 488.023 kb on + strand at 488.086 kb on + strand at 488.094 kb on - strand at 489.092 kb on - strand, within Shew_0438 at 489.658 kb on + strand, within Shew_0439 at 489.916 kb on - strand, within Shew_0439 at 490.044 kb on + strand, within Shew_0439 at 490.214 kb on - strand at 490.405 kb on - strand, within Shew_0440
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 25 mM remove 487,897 - +0.1 487,929 - -0.0 488,023 + -0.0 488,086 + -0.2 488,094 - -0.1 489,092 - Shew_0438 0.63 -0.5 489,658 + Shew_0439 0.20 +0.1 489,916 - Shew_0439 0.61 +0.1 490,044 + Shew_0439 0.81 +0.1 490,214 - +0.0 490,405 - Shew_0440 0.27 +0.0
Or see this region's nucleotide sequence