Experiment: m.b. Zinc 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2578 and Dshi_2579 are separated by 143 nucleotides Dshi_2579 and Dshi_2580 are separated by 165 nucleotides Dshi_2580 and Dshi_2581 are separated by 48 nucleotides Dshi_2581 and Dshi_2582 are separated by 82 nucleotides
Dshi_2578: Dshi_2578 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (RefSeq), at 2,743,867 to 2,744,589
_2578
Dshi_2579: Dshi_2579 - hypothetical protein (RefSeq), at 2,744,733 to 2,745,137
_2579
Dshi_2580: Dshi_2580 - ATP-dependent helicase HrpB (RefSeq), at 2,745,303 to 2,747,807
_2580
Dshi_2581: Dshi_2581 - hypothetical protein (RefSeq), at 2,747,856 to 2,748,656
_2581
Dshi_2582: Dshi_2582 - LAO/AO transport system ATPase (RefSeq), at 2,748,739 to 2,749,815
_2582
Position (kb)
2745
2746
2747
2748 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2744.681 kb on - strand at 2744.810 kb on + strand, within Dshi_2579 at 2744.825 kb on + strand, within Dshi_2579 at 2744.833 kb on - strand, within Dshi_2579 at 2744.833 kb on - strand, within Dshi_2579 at 2744.833 kb on - strand, within Dshi_2579 at 2744.942 kb on - strand, within Dshi_2579 at 2744.942 kb on - strand, within Dshi_2579 at 2744.945 kb on + strand, within Dshi_2579 at 2744.985 kb on - strand, within Dshi_2579 at 2745.115 kb on + strand at 2745.123 kb on - strand at 2745.123 kb on - strand at 2745.177 kb on + strand at 2745.308 kb on - strand at 2745.335 kb on - strand at 2745.384 kb on + strand at 2745.414 kb on - strand at 2745.515 kb on + strand at 2745.605 kb on - strand, within Dshi_2580 at 2745.712 kb on + strand, within Dshi_2580 at 2745.746 kb on + strand, within Dshi_2580 at 2745.810 kb on - strand, within Dshi_2580 at 2745.810 kb on - strand, within Dshi_2580 at 2745.810 kb on - strand, within Dshi_2580 at 2745.810 kb on - strand, within Dshi_2580 at 2745.810 kb on - strand, within Dshi_2580 at 2745.823 kb on + strand, within Dshi_2580 at 2746.071 kb on - strand, within Dshi_2580 at 2746.075 kb on - strand, within Dshi_2580 at 2746.247 kb on - strand, within Dshi_2580 at 2746.489 kb on + strand, within Dshi_2580 at 2746.640 kb on - strand, within Dshi_2580 at 2746.741 kb on - strand, within Dshi_2580 at 2746.933 kb on + strand, within Dshi_2580 at 2747.005 kb on + strand, within Dshi_2580 at 2747.116 kb on - strand, within Dshi_2580 at 2747.174 kb on + strand, within Dshi_2580 at 2747.182 kb on - strand, within Dshi_2580 at 2747.225 kb on - strand, within Dshi_2580 at 2747.248 kb on + strand, within Dshi_2580 at 2747.260 kb on + strand, within Dshi_2580 at 2747.318 kb on + strand, within Dshi_2580 at 2747.318 kb on + strand at 2747.318 kb on + strand, within Dshi_2580 at 2747.318 kb on + strand, within Dshi_2580 at 2747.326 kb on - strand, within Dshi_2580 at 2747.345 kb on - strand, within Dshi_2580 at 2747.345 kb on - strand, within Dshi_2580 at 2747.462 kb on - strand, within Dshi_2580 at 2747.531 kb on - strand, within Dshi_2580 at 2747.755 kb on - strand at 2747.931 kb on - strand at 2748.014 kb on + strand, within Dshi_2581 at 2748.140 kb on + strand, within Dshi_2581 at 2748.145 kb on + strand, within Dshi_2581 at 2748.224 kb on + strand, within Dshi_2581 at 2748.289 kb on - strand, within Dshi_2581 at 2748.292 kb on - strand, within Dshi_2581 at 2748.373 kb on + strand, within Dshi_2581 at 2748.517 kb on - strand, within Dshi_2581 at 2748.519 kb on + strand, within Dshi_2581 at 2748.519 kb on + strand, within Dshi_2581 at 2748.588 kb on - strand at 2748.620 kb on + strand at 2748.654 kb on - strand at 2748.713 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.3 mM remove 2,744,681 - -1.6 2,744,810 + Dshi_2579 0.19 -0.5 2,744,825 + Dshi_2579 0.23 +0.9 2,744,833 - Dshi_2579 0.25 +0.0 2,744,833 - Dshi_2579 0.25 +0.1 2,744,833 - Dshi_2579 0.25 +0.7 2,744,942 - Dshi_2579 0.52 +0.4 2,744,942 - Dshi_2579 0.52 +0.5 2,744,945 + Dshi_2579 0.52 +0.5 2,744,985 - Dshi_2579 0.62 -0.6 2,745,115 + -0.6 2,745,123 - +2.7 2,745,123 - -0.3 2,745,177 + -0.1 2,745,308 - +0.1 2,745,335 - +0.1 2,745,384 + +1.1 2,745,414 - -0.1 2,745,515 + +0.2 2,745,605 - Dshi_2580 0.12 +0.8 2,745,712 + Dshi_2580 0.16 -0.6 2,745,746 + Dshi_2580 0.18 +0.1 2,745,810 - Dshi_2580 0.20 -1.2 2,745,810 - Dshi_2580 0.20 +0.7 2,745,810 - Dshi_2580 0.20 +0.2 2,745,810 - Dshi_2580 0.20 -0.9 2,745,810 - Dshi_2580 0.20 -0.6 2,745,823 + Dshi_2580 0.21 +0.2 2,746,071 - Dshi_2580 0.31 -0.8 2,746,075 - Dshi_2580 0.31 +0.5 2,746,247 - Dshi_2580 0.38 -1.9 2,746,489 + Dshi_2580 0.47 -1.2 2,746,640 - Dshi_2580 0.53 -0.0 2,746,741 - Dshi_2580 0.57 -0.6 2,746,933 + Dshi_2580 0.65 +0.5 2,747,005 + Dshi_2580 0.68 +0.7 2,747,116 - Dshi_2580 0.72 +0.9 2,747,174 + Dshi_2580 0.75 +0.1 2,747,182 - Dshi_2580 0.75 +1.3 2,747,225 - Dshi_2580 0.77 +0.1 2,747,248 + Dshi_2580 0.78 -0.7 2,747,260 + Dshi_2580 0.78 -1.3 2,747,318 + Dshi_2580 0.80 +0.0 2,747,318 + -0.9 2,747,318 + Dshi_2580 0.80 -0.4 2,747,318 + Dshi_2580 0.80 -0.4 2,747,326 - Dshi_2580 0.81 +0.9 2,747,345 - Dshi_2580 0.82 -0.2 2,747,345 - Dshi_2580 0.82 -0.3 2,747,462 - Dshi_2580 0.86 -0.2 2,747,531 - Dshi_2580 0.89 +0.3 2,747,755 - -0.4 2,747,931 - +0.7 2,748,014 + Dshi_2581 0.20 -1.1 2,748,140 + Dshi_2581 0.35 -0.7 2,748,145 + Dshi_2581 0.36 -0.1 2,748,224 + Dshi_2581 0.46 -0.2 2,748,289 - Dshi_2581 0.54 +0.9 2,748,292 - Dshi_2581 0.54 -0.3 2,748,373 + Dshi_2581 0.65 +0.5 2,748,517 - Dshi_2581 0.83 +0.9 2,748,519 + Dshi_2581 0.83 +1.2 2,748,519 + Dshi_2581 0.83 -0.7 2,748,588 - -0.4 2,748,620 + +0.2 2,748,654 - -0.1 2,748,713 + +0.6
Or see this region's nucleotide sequence