Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2579

Experiment: m.b. Zinc 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2578 and Dshi_2579 are separated by 143 nucleotidesDshi_2579 and Dshi_2580 are separated by 165 nucleotides Dshi_2578: Dshi_2578 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (RefSeq), at 2,743,867 to 2,744,589 _2578 Dshi_2579: Dshi_2579 - hypothetical protein (RefSeq), at 2,744,733 to 2,745,137 _2579 Dshi_2580: Dshi_2580 - ATP-dependent helicase HrpB (RefSeq), at 2,745,303 to 2,747,807 _2580 Position (kb) 2744 2745 2746Strain fitness (log2 ratio) -1 0 1 2at 2743.741 kb on + strandat 2743.855 kb on + strandat 2744.681 kb on - strandat 2744.810 kb on + strand, within Dshi_2579at 2744.825 kb on + strand, within Dshi_2579at 2744.833 kb on - strand, within Dshi_2579at 2744.833 kb on - strand, within Dshi_2579at 2744.833 kb on - strand, within Dshi_2579at 2744.942 kb on - strand, within Dshi_2579at 2744.942 kb on - strand, within Dshi_2579at 2744.945 kb on + strand, within Dshi_2579at 2744.985 kb on - strand, within Dshi_2579at 2745.115 kb on + strandat 2745.123 kb on - strandat 2745.123 kb on - strandat 2745.177 kb on + strandat 2745.308 kb on - strandat 2745.335 kb on - strandat 2745.384 kb on + strandat 2745.414 kb on - strandat 2745.515 kb on + strandat 2745.605 kb on - strand, within Dshi_2580at 2745.712 kb on + strand, within Dshi_2580at 2745.746 kb on + strand, within Dshi_2580at 2745.810 kb on - strand, within Dshi_2580at 2745.810 kb on - strand, within Dshi_2580at 2745.810 kb on - strand, within Dshi_2580at 2745.810 kb on - strand, within Dshi_2580at 2745.810 kb on - strand, within Dshi_2580at 2745.823 kb on + strand, within Dshi_2580at 2746.071 kb on - strand, within Dshi_2580at 2746.075 kb on - strand, within Dshi_2580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.3 mM
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2,743,741 + -0.3
2,743,855 + -0.5
2,744,681 - -1.6
2,744,810 + Dshi_2579 0.19 -0.5
2,744,825 + Dshi_2579 0.23 +0.9
2,744,833 - Dshi_2579 0.25 +0.0
2,744,833 - Dshi_2579 0.25 +0.1
2,744,833 - Dshi_2579 0.25 +0.7
2,744,942 - Dshi_2579 0.52 +0.4
2,744,942 - Dshi_2579 0.52 +0.5
2,744,945 + Dshi_2579 0.52 +0.5
2,744,985 - Dshi_2579 0.62 -0.6
2,745,115 + -0.6
2,745,123 - +2.7
2,745,123 - -0.3
2,745,177 + -0.1
2,745,308 - +0.1
2,745,335 - +0.1
2,745,384 + +1.1
2,745,414 - -0.1
2,745,515 + +0.2
2,745,605 - Dshi_2580 0.12 +0.8
2,745,712 + Dshi_2580 0.16 -0.6
2,745,746 + Dshi_2580 0.18 +0.1
2,745,810 - Dshi_2580 0.20 -1.2
2,745,810 - Dshi_2580 0.20 +0.7
2,745,810 - Dshi_2580 0.20 +0.2
2,745,810 - Dshi_2580 0.20 -0.9
2,745,810 - Dshi_2580 0.20 -0.6
2,745,823 + Dshi_2580 0.21 +0.2
2,746,071 - Dshi_2580 0.31 -0.8
2,746,075 - Dshi_2580 0.31 +0.5

Or see this region's nucleotide sequence