Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1255

Experiment: m.b. Zinc 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1254 and Dshi_1255 overlap by 4 nucleotidesDshi_1255 and Dshi_1256 are separated by 67 nucleotidesDshi_1256 and Dshi_1257 are separated by 10 nucleotides Dshi_1254: Dshi_1254 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,300,949 to 1,301,971 _1254 Dshi_1255: Dshi_1255 - major facilitator superfamily MFS_1 (RefSeq), at 1,301,968 to 1,303,236 _1255 Dshi_1256: Dshi_1256 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,303,304 to 1,303,924 _1256 Dshi_1257: Dshi_1257 - hypothetical protein (RefSeq), at 1,303,935 to 1,304,216 _1257 Position (kb) 1301 1302 1303 1304Strain fitness (log2 ratio) -3 -2 -1 0 1at 1300.975 kb on - strandat 1301.032 kb on + strandat 1301.144 kb on - strand, within Dshi_1254at 1301.180 kb on - strand, within Dshi_1254at 1301.185 kb on + strand, within Dshi_1254at 1301.185 kb on + strand, within Dshi_1254at 1301.193 kb on - strand, within Dshi_1254at 1301.229 kb on + strand, within Dshi_1254at 1301.236 kb on - strand, within Dshi_1254at 1301.300 kb on + strand, within Dshi_1254at 1301.467 kb on + strand, within Dshi_1254at 1301.620 kb on + strand, within Dshi_1254at 1301.890 kb on + strandat 1301.892 kb on - strandat 1302.206 kb on - strand, within Dshi_1255at 1302.247 kb on - strand, within Dshi_1255at 1302.319 kb on + strand, within Dshi_1255at 1302.436 kb on + strand, within Dshi_1255at 1302.531 kb on + strand, within Dshi_1255at 1302.631 kb on - strand, within Dshi_1255at 1302.660 kb on + strand, within Dshi_1255at 1302.767 kb on - strand, within Dshi_1255at 1302.793 kb on + strand, within Dshi_1255at 1302.793 kb on + strand, within Dshi_1255at 1302.793 kb on + strand, within Dshi_1255at 1302.801 kb on - strand, within Dshi_1255at 1302.864 kb on + strand, within Dshi_1255at 1302.888 kb on + strand, within Dshi_1255at 1302.896 kb on - strand, within Dshi_1255at 1303.053 kb on + strand, within Dshi_1255at 1303.272 kb on + strandat 1303.303 kb on - strandat 1303.431 kb on - strand, within Dshi_1256at 1303.535 kb on + strand, within Dshi_1256at 1303.543 kb on - strand, within Dshi_1256at 1303.589 kb on - strand, within Dshi_1256at 1303.589 kb on - strand, within Dshi_1256at 1303.725 kb on + strand, within Dshi_1256at 1303.736 kb on + strand, within Dshi_1256at 1303.744 kb on - strand, within Dshi_1256at 1303.744 kb on - strand, within Dshi_1256at 1303.746 kb on + strand, within Dshi_1256at 1303.853 kb on - strand, within Dshi_1256at 1303.854 kb on + strand, within Dshi_1256at 1303.872 kb on + strandat 1303.882 kb on + strandat 1303.890 kb on - strandat 1303.892 kb on + strandat 1303.906 kb on + strandat 1303.921 kb on - strandat 1303.950 kb on - strandat 1303.982 kb on - strand, within Dshi_1257at 1304.018 kb on - strand, within Dshi_1257at 1304.018 kb on - strand, within Dshi_1257at 1304.077 kb on + strand, within Dshi_1257at 1304.077 kb on + strand, within Dshi_1257

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.3 mM
remove
1,300,975 - -0.7
1,301,032 + -0.9
1,301,144 - Dshi_1254 0.19 +0.4
1,301,180 - Dshi_1254 0.23 -0.5
1,301,185 + Dshi_1254 0.23 -0.2
1,301,185 + Dshi_1254 0.23 -0.6
1,301,193 - Dshi_1254 0.24 +0.9
1,301,229 + Dshi_1254 0.27 -0.7
1,301,236 - Dshi_1254 0.28 -1.4
1,301,300 + Dshi_1254 0.34 -0.4
1,301,467 + Dshi_1254 0.51 -0.2
1,301,620 + Dshi_1254 0.66 -1.5
1,301,890 + +0.6
1,301,892 - +0.5
1,302,206 - Dshi_1255 0.19 +0.6
1,302,247 - Dshi_1255 0.22 -0.6
1,302,319 + Dshi_1255 0.28 +0.4
1,302,436 + Dshi_1255 0.37 -0.9
1,302,531 + Dshi_1255 0.44 +0.3
1,302,631 - Dshi_1255 0.52 +0.5
1,302,660 + Dshi_1255 0.55 +0.3
1,302,767 - Dshi_1255 0.63 -0.2
1,302,793 + Dshi_1255 0.65 +0.3
1,302,793 + Dshi_1255 0.65 -0.7
1,302,793 + Dshi_1255 0.65 -0.6
1,302,801 - Dshi_1255 0.66 +0.2
1,302,864 + Dshi_1255 0.71 -0.3
1,302,888 + Dshi_1255 0.72 -0.2
1,302,896 - Dshi_1255 0.73 -0.5
1,303,053 + Dshi_1255 0.86 -1.6
1,303,272 + -0.3
1,303,303 - -0.6
1,303,431 - Dshi_1256 0.20 +0.2
1,303,535 + Dshi_1256 0.37 +1.5
1,303,543 - Dshi_1256 0.38 -1.7
1,303,589 - Dshi_1256 0.46 +0.4
1,303,589 - Dshi_1256 0.46 -0.4
1,303,725 + Dshi_1256 0.68 +0.4
1,303,736 + Dshi_1256 0.70 +0.1
1,303,744 - Dshi_1256 0.71 +0.9
1,303,744 - Dshi_1256 0.71 -0.5
1,303,746 + Dshi_1256 0.71 +0.8
1,303,853 - Dshi_1256 0.88 -0.7
1,303,854 + Dshi_1256 0.89 +0.1
1,303,872 + +0.4
1,303,882 + -2.9
1,303,890 - -0.4
1,303,892 + -0.1
1,303,906 + -1.1
1,303,921 - -1.7
1,303,950 - +0.5
1,303,982 - Dshi_1257 0.17 -0.1
1,304,018 - Dshi_1257 0.29 -0.5
1,304,018 - Dshi_1257 0.29 -0.8
1,304,077 + Dshi_1257 0.50 -0.1
1,304,077 + Dshi_1257 0.50 +0.6

Or see this region's nucleotide sequence