Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05615

Experiment: H2 deepwell casamino FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 deepwell casamino FREE
1,076,535	-		MMP_RS05605	0.88	+0.6
1,076,536	+		MMP_RS05605	0.88	-0.5
1,076,540	+		MMP_RS05605	0.88	-0.2
1,076,551	-		MMP_RS05605	0.89	+0.5
1,076,624	-				-0.1
1,076,624	-				+0.5
1,076,625	+				-0.3
1,076,626	-				-0.4
1,076,627	+				+0.3
1,076,628	-				+0.1
1,076,634	+				-1.1
1,076,725	+				-0.0
1,076,738	-				+0.0
1,076,740	-				-0.1
1,076,741	+				-0.4
1,076,797	-				+0.2
1,076,798	+				-0.1
1,076,798	+				+0.6
1,076,810	+				+0.3
1,076,813	-				+0.6
1,076,813	-				+0.2
1,076,814	+				-0.1
1,076,814	+				-0.6
1,076,819	+				+0.3
1,076,828	-		MMP_RS05610	0.11	-1.2
1,076,839	-		MMP_RS05610	0.12	+0.5
1,076,839	-		MMP_RS05610	0.12	+0.3
1,076,840	+		MMP_RS05610	0.12	+0.0
1,076,851	-		MMP_RS05610	0.14	+0.1
1,076,876	+		MMP_RS05610	0.18	+0.6
1,076,878	+		MMP_RS05610	0.18	+0.2
1,076,883	+		MMP_RS05610	0.19	+0.2
1,076,890	-		MMP_RS05610	0.20	-1.3
1,076,916	+		MMP_RS05610	0.24	+0.9
1,076,935	-		MMP_RS05610	0.27	+0.2
1,077,026	-		MMP_RS05610	0.40	+0.2
1,077,027	+		MMP_RS05610	0.40	-0.0
1,077,032	-		MMP_RS05610	0.41	+0.9
1,077,032	-		MMP_RS05610	0.41	-1.9
1,077,104	-		MMP_RS05610	0.52	-0.3
1,077,118	-		MMP_RS05610	0.54	-0.2
1,077,122	-		MMP_RS05610	0.54	-0.6
1,077,142	-		MMP_RS05610	0.57	+0.3
1,077,143	+		MMP_RS05610	0.57	-0.5
1,077,190	-		MMP_RS05610	0.64	+0.2
1,077,195	+		MMP_RS05610	0.65	+0.1
1,077,195	+		MMP_RS05610	0.65	+0.1
1,077,196	-		MMP_RS05610	0.65	-0.0
1,077,229	-		MMP_RS05610	0.70	+0.4
1,077,239	-		MMP_RS05610	0.72	+0.1
1,077,239	-		MMP_RS05610	0.72	-0.4
1,077,240	+		MMP_RS05610	0.72	-0.9
1,077,262	-		MMP_RS05610	0.75	+0.1
1,077,282	+		MMP_RS05610	0.78	+0.3
1,077,334	-		MMP_RS05610	0.86	-0.3
1,077,335	+		MMP_RS05610	0.86	-0.5
1,077,338	-		MMP_RS05610	0.86	+0.8
1,077,349	-		MMP_RS05610	0.88	-0.1
1,077,355	-		MMP_RS05610	0.89	+0.2
1,077,369	+				+0.2
1,077,369	+				-0.1
1,077,369	+				+0.1
1,077,369	+				+0.5
1,077,372	-				-1.1
1,077,373	+				-1.0
1,077,384	-				-0.0
1,077,385	+				-0.2
1,077,398	+				-2.5
1,077,401	+				+0.4
1,077,409	-				+0.3
1,077,476	+				+0.2
1,077,476	+				+0.8
1,077,485	-				-0.0
1,077,492	-				+0.5
1,077,493	+				+0.4
1,077,493	+				+0.4
1,077,496	+				-0.0
1,077,524	+				+0.7
1,077,559	-				+0.5
1,077,586	+		MMP_RS05615	0.12	+0.1
1,077,602	-		MMP_RS05615	0.14	+0.6
1,077,611	-		MMP_RS05615	0.15	-0.9
1,077,700	-		MMP_RS05615	0.24	+0.6
1,077,701	+		MMP_RS05615	0.24	-0.2
1,077,701	+		MMP_RS05615	0.24	+0.4
1,077,701	+		MMP_RS05615	0.24	+0.4
1,077,701	+		MMP_RS05615	0.24	+0.6
1,077,702	-		MMP_RS05615	0.24	+0.5
1,077,702	-		MMP_RS05615	0.24	-1.5
1,077,702	-		MMP_RS05615	0.24	+0.2
1,077,702	-		MMP_RS05615	0.24	+0.9
1,077,702	-		MMP_RS05615	0.24	-0.3
1,077,703	+		MMP_RS05615	0.25	+0.7
1,077,703	+		MMP_RS05615	0.25	+0.3
1,077,703	+		MMP_RS05615	0.25	+0.3
1,077,713	+		MMP_RS05615	0.26	+2.1
1,077,819	+		MMP_RS05615	0.37	+1.1
1,077,848	+		MMP_RS05615	0.40	-0.2
1,077,849	-		MMP_RS05615	0.40	-0.3
1,077,849	-		MMP_RS05615	0.40	+0.6
1,077,849	-		MMP_RS05615	0.40	+0.5
1,077,851	-		MMP_RS05615	0.40	+0.9
1,077,852	+		MMP_RS05615	0.40	-0.6
1,077,856	-		MMP_RS05615	0.40	+0.8
1,077,861	+		MMP_RS05615	0.41	+1.3
1,077,869	+		MMP_RS05615	0.42	+0.3
1,077,872	-		MMP_RS05615	0.42	+1.5
1,077,873	+		MMP_RS05615	0.42	+0.6
1,077,905	-		MMP_RS05615	0.45	-0.2
1,077,926	+		MMP_RS05615	0.48	+0.7
1,077,953	+		MMP_RS05615	0.50	+0.2
1,077,964	+		MMP_RS05615	0.52	+0.8
1,078,012	-		MMP_RS05615	0.57	+0.8
1,078,013	+		MMP_RS05615	0.57	+0.3
1,078,088	+		MMP_RS05615	0.64	-0.3
1,078,184	-		MMP_RS05615	0.74	+0.1
1,078,211	-		MMP_RS05615	0.77	-0.0
1,078,212	+		MMP_RS05615	0.77	+0.2
1,078,354	-				-0.4
1,078,359	-				-0.6
1,078,393	-				-0.5
1,078,397	+				+0.4
1,078,401	+				+0.7
1,078,433	+				+0.7
1,078,441	-				-0.6
1,078,442	+				+2.5
1,078,443	-				-0.7
1,078,443	-				+0.6
1,078,443	-				+0.3
1,078,443	-				+0.2
1,078,443	-				+0.7
1,078,443	-				-0.1
1,078,444	+				+0.1
1,078,444	+				-0.5
1,078,444	+				-0.3
1,078,444	+				+0.1
1,078,444	+				+0.5
1,078,444	+				-1.5
1,078,444	+				-0.3
1,078,446	-				-0.5
1,078,446	-				+0.7
1,078,446	-				+0.3
1,078,447	+				-0.2
1,078,447	+				+1.2
1,078,447	+				+0.2
1,078,447	+				+0.2
1,078,451	+				+0.5
1,078,463	-				+1.1
1,078,475	-				+0.2
1,078,475	-				+0.6
1,078,480	+				-0.3
1,078,480	+				+1.0
1,078,594	-		MMP_RS05620	0.11	+0.7
1,078,657	+		MMP_RS05620	0.17	+0.6
1,078,668	-		MMP_RS05620	0.19	+0.7
1,078,711	-		MMP_RS05620	0.23	-0.5
1,078,711	-		MMP_RS05620	0.23	+1.3
1,078,711	-		MMP_RS05620	0.23	+0.0
1,078,711	-		MMP_RS05620	0.23	-0.1
1,078,712	+		MMP_RS05620	0.23	+0.5
1,078,712	+		MMP_RS05620	0.23	-0.1
1,078,712	+		MMP_RS05620	0.23	+0.5
1,078,751	-		MMP_RS05620	0.26	-0.3
1,078,762	+		MMP_RS05620	0.28	-0.6
1,078,762	+		MMP_RS05620	0.28	-0.4
1,078,771	-		MMP_RS05620	0.28	+0.7
1,078,772	+		MMP_RS05620	0.28	-0.2
1,078,773	-		MMP_RS05620	0.29	+0.1
1,078,777	+		MMP_RS05620	0.29	+0.4
1,078,803	+		MMP_RS05620	0.31	+0.0
1,078,842	-		MMP_RS05620	0.35	+0.4
1,078,867	+		MMP_RS05620	0.38	+0.5
1,078,898	-		MMP_RS05620	0.40	-0.8
1,078,995	-		MMP_RS05620	0.50	-0.7
1,079,011	-		MMP_RS05620	0.51	+0.2
1,079,012	+		MMP_RS05620	0.51	+0.3
1,079,012	+		MMP_RS05620	0.51	+0.3
1,079,024	+		MMP_RS05620	0.53	+0.3
1,079,062	-		MMP_RS05620	0.56	+0.6
1,079,062	-		MMP_RS05620	0.56	-0.3
1,079,062	-		MMP_RS05620	0.56	-0.5
1,079,063	+		MMP_RS05620	0.56	+0.1
1,079,063	+		MMP_RS05620	0.56	+0.3
1,079,063	+		MMP_RS05620	0.56	-1.1
1,079,087	+		MMP_RS05620	0.59	+0.4
1,079,094	+		MMP_RS05620	0.59	+0.4
1,079,175	-		MMP_RS05620	0.67	+1.0
1,079,176	+		MMP_RS05620	0.67	+0.4
1,079,214	-		MMP_RS05620	0.71	+0.7
1,079,236	-		MMP_RS05620	0.73	+0.2
1,079,237	+		MMP_RS05620	0.73	+0.1
1,079,279	+		MMP_RS05620	0.77	+0.6
1,079,302	+		MMP_RS05620	0.79	-0.2
1,079,325	-		MMP_RS05620	0.81	+1.2
1,079,325	-		MMP_RS05620	0.81	+0.4
1,079,326	+		MMP_RS05620	0.81	+0.8
1,079,326	+		MMP_RS05620	0.81	+0.3
1,079,327	-		MMP_RS05620	0.81	+0.2
1,079,328	+		MMP_RS05620	0.82	-0.8
1,079,328	+		MMP_RS05620	0.82	-1.5
1,079,328	+		MMP_RS05620	0.82	+0.2
1,079,328	+		MMP_RS05620	0.82	+0.2
1,079,399	-		MMP_RS05620	0.88	+0.6
1,079,412	-		MMP_RS05620	0.90	-0.4
1,079,413	+		MMP_RS05620	0.90	+0.1
1,079,423	+				+0.4
1,079,423	+				-0.3
1,079,423	+				+0.3
1,079,428	+				+0.3