Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15015

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
3,318,197	+		LRK54_RS15010	0.22	-0.2
3,318,199	+		LRK54_RS15010	0.22	+0.1
3,318,199	+		LRK54_RS15010	0.22	+0.7
3,318,199	+		LRK54_RS15010	0.22	+0.8
3,318,199	+		LRK54_RS15010	0.22	+0.8
3,318,200	-		LRK54_RS15010	0.22	-0.4
3,318,200	-		LRK54_RS15010	0.22	+0.8
3,318,200	-		LRK54_RS15010	0.22	-2.0
3,318,200	-		LRK54_RS15010	0.22	+0.3
3,318,264	+		LRK54_RS15010	0.31	+0.2
3,318,292	-		LRK54_RS15010	0.35	-0.2
3,318,292	-		LRK54_RS15010	0.35	+0.3
3,318,292	-		LRK54_RS15010	0.35	+1.8
3,318,292	-		LRK54_RS15010	0.35	+0.8
3,318,292	-		LRK54_RS15010	0.35	-0.3
3,318,292	-		LRK54_RS15010	0.35	+0.2
3,318,292	-		LRK54_RS15010	0.35	+0.4
3,318,292	-		LRK54_RS15010	0.35	+0.2
3,318,292	-		LRK54_RS15010	0.35	-0.6
3,318,292	-		LRK54_RS15010	0.35	-0.5
3,318,292	-		LRK54_RS15010	0.35	-0.0
3,318,294	-		LRK54_RS15010	0.35	-1.4
3,318,294	-		LRK54_RS15010	0.35	+1.4
3,318,294	-		LRK54_RS15010	0.35	+1.7
3,318,294	-		LRK54_RS15010	0.35	+2.0
3,318,294	-		LRK54_RS15010	0.35	+0.8
3,318,294	-		LRK54_RS15010	0.35	+0.2
3,318,294	-		LRK54_RS15010	0.35	-0.6
3,318,294	-		LRK54_RS15010	0.35	-0.5
3,318,294	-		LRK54_RS15010	0.35	+0.1
3,318,294	-		LRK54_RS15010	0.35	-0.7
3,318,294	-		LRK54_RS15010	0.35	-0.5
3,318,294	-		LRK54_RS15010	0.35	-1.0
3,318,492	-		LRK54_RS15010	0.63	+0.4
3,318,492	-		LRK54_RS15010	0.63	+0.2
3,318,492	-		LRK54_RS15010	0.63	+2.1
3,318,492	-		LRK54_RS15010	0.63	-0.2
3,318,492	-		LRK54_RS15010	0.63	-0.5
3,318,492	-		LRK54_RS15010	0.63	-2.5
3,318,492	-		LRK54_RS15010	0.63	-1.3
3,318,492	-		LRK54_RS15010	0.63	-1.5
3,318,492	-		LRK54_RS15010	0.63	+1.4
3,318,492	-		LRK54_RS15010	0.63	+0.6
3,318,492	-		LRK54_RS15010	0.63	+1.6
3,318,492	-		LRK54_RS15010	0.63	+0.1
3,318,492	-		LRK54_RS15010	0.63	-2.1
3,318,492	-		LRK54_RS15010	0.63	+0.6
3,318,549	-		LRK54_RS15010	0.71	-0.1
3,318,549	-		LRK54_RS15010	0.71	+0.8
3,318,549	-		LRK54_RS15010	0.71	+2.8
3,318,549	-		LRK54_RS15010	0.71	+0.5
3,318,549	-		LRK54_RS15010	0.71	-0.0
3,318,549	-		LRK54_RS15010	0.71	+0.8
3,318,549	-		LRK54_RS15010	0.71	-0.0
3,318,567	-		LRK54_RS15010	0.74	+1.3
3,318,567	-		LRK54_RS15010	0.74	+0.4
3,318,567	-		LRK54_RS15010	0.74	+1.5
3,318,567	-		LRK54_RS15010	0.74	-0.5
3,318,567	-		LRK54_RS15010	0.74	+0.4
3,318,567	-		LRK54_RS15010	0.74	+2.2
3,318,567	-		LRK54_RS15010	0.74	-1.0
3,318,583	+		LRK54_RS15010	0.76	+1.4
3,318,584	-		LRK54_RS15010	0.76	-1.7
3,318,609	-		LRK54_RS15010	0.79	+0.6
3,318,764	+				-0.5
3,318,765	+				+0.6
3,318,766	+				+0.3
3,318,766	+				-0.5
3,318,766	+				-0.3
3,318,766	+				+0.9
3,318,766	+				-0.5
3,318,766	+				+0.7
3,318,766	+				+1.0
3,318,766	+				+0.8
3,318,766	+				-0.5
3,318,766	+				+1.0
3,318,766	+				+1.2
3,318,766	+				+0.5
3,318,766	+				+0.1
3,318,767	-				+0.2
3,318,767	-				-0.0
3,318,767	-				+0.2
3,318,767	-				+0.1
3,318,767	-				+0.6
3,318,767	-				+0.5
3,318,767	-				+0.8
3,318,767	-				-0.7
3,318,767	-				+0.6
3,318,767	-				-0.2
3,318,767	-				-0.2
3,318,767	-				+0.1
3,318,767	-				-0.5
3,318,767	-				-1.0
3,318,767	-				-0.5
3,318,767	-				+0.2
3,318,767	-				-0.8
3,318,767	-				+1.5
3,318,790	+				-0.8
3,318,790	+				-0.2
3,318,790	+				+0.8
3,318,790	+				+0.7
3,318,791	-				-1.5
3,318,791	-				-1.2
3,318,791	-				-0.2
3,318,791	-				+1.5
3,318,791	-				-0.5
3,318,791	-				-0.2
3,319,040	+		LRK54_RS15015	0.14	+1.4
3,319,040	+		LRK54_RS15015	0.14	+1.5
3,319,041	-		LRK54_RS15015	0.14	+0.0
3,319,041	-		LRK54_RS15015	0.14	+2.0
3,319,041	-		LRK54_RS15015	0.14	+1.5
3,319,181	+		LRK54_RS15015	0.23	+1.1
3,319,181	+		LRK54_RS15015	0.23	+1.4
3,319,181	+		LRK54_RS15015	0.23	+1.0
3,319,181	+		LRK54_RS15015	0.23	+0.6
3,319,181	+		LRK54_RS15015	0.23	+1.2
3,319,181	+		LRK54_RS15015	0.23	+1.3
3,319,181	+		LRK54_RS15015	0.23	+1.6
3,319,181	+		LRK54_RS15015	0.23	+1.1
3,319,181	+		LRK54_RS15015	0.23	+1.0
3,319,182	-		LRK54_RS15015	0.23	+1.5
3,319,182	-		LRK54_RS15015	0.23	+0.8
3,319,182	-		LRK54_RS15015	0.23	+1.5
3,319,182	-		LRK54_RS15015	0.23	+0.6
3,319,182	-		LRK54_RS15015	0.23	-2.0
3,319,182	-		LRK54_RS15015	0.23	+1.8
3,319,182	-		LRK54_RS15015	0.23	+0.9
3,319,182	-		LRK54_RS15015	0.23	+1.7
3,319,182	-		LRK54_RS15015	0.23	+1.5
3,319,182	-		LRK54_RS15015	0.23	+0.5
3,319,182	-		LRK54_RS15015	0.23	+0.6
3,319,182	-		LRK54_RS15015	0.23	+1.2
3,319,603	+		LRK54_RS15015	0.51	+1.2
3,319,603	+		LRK54_RS15015	0.51	+1.6
3,319,603	+		LRK54_RS15015	0.51	+1.0
3,319,603	+		LRK54_RS15015	0.51	-0.1
3,319,603	+		LRK54_RS15015	0.51	+1.4
3,319,694	+		LRK54_RS15015	0.57	+1.8
3,319,695	-		LRK54_RS15015	0.57	-0.7
3,319,695	-		LRK54_RS15015	0.57	+1.8
3,319,721	+		LRK54_RS15015	0.59	+0.6
3,319,721	+		LRK54_RS15015	0.59	+1.8
3,319,721	+		LRK54_RS15015	0.59	+0.6
3,319,722	-		LRK54_RS15015	0.59	+1.6
3,320,438	+				-0.9
3,320,439	-				+0.5
3,320,468	+				-2.4
3,320,468	+				-2.1
3,320,468	+				+0.2
3,320,468	+				-0.2
3,320,469	-				+1.8
3,320,469	-				-1.9
3,320,469	-				-1.7
3,320,501	+				-0.8
3,320,501	+				-1.9
3,320,501	+				-1.3
3,320,502	-				-1.8
3,320,502	-				-3.1
3,320,502	-				+1.8
3,320,502	-				-1.5
3,320,663	+		LRK54_RS15020	0.11	-0.3
3,320,663	+		LRK54_RS15020	0.11	-1.2
3,320,663	+		LRK54_RS15020	0.11	-1.1
3,320,663	+		LRK54_RS15020	0.11	-1.8
3,320,663	+		LRK54_RS15020	0.11	-2.8
3,320,663	+		LRK54_RS15020	0.11	-0.2
3,320,663	+		LRK54_RS15020	0.11	-0.8
3,320,663	+		LRK54_RS15020	0.11	-2.8
3,320,663	+		LRK54_RS15020	0.11	-2.5
3,320,663	+		LRK54_RS15020	0.11	-0.1
3,320,663	+		LRK54_RS15020	0.11	+0.2
3,320,663	+		LRK54_RS15020	0.11	-3.0
3,320,663	+		LRK54_RS15020	0.11	-1.6
3,320,663	+		LRK54_RS15020	0.11	-3.2
3,320,663	+		LRK54_RS15020	0.11	-2.8
3,320,664	-		LRK54_RS15020	0.11	-2.7
3,320,664	-		LRK54_RS15020	0.11	+1.8
3,320,664	-		LRK54_RS15020	0.11	+1.8
3,320,664	-		LRK54_RS15020	0.11	-2.7
3,320,664	-		LRK54_RS15020	0.11	-0.5
3,320,664	-		LRK54_RS15020	0.11	+0.5
3,320,664	-		LRK54_RS15020	0.11	+0.8
3,320,664	-		LRK54_RS15020	0.11	-1.2
3,320,664	-		LRK54_RS15020	0.11	-1.0
3,320,664	-		LRK54_RS15020	0.11	-2.9
3,320,664	-		LRK54_RS15020	0.11	-1.2
3,320,664	-		LRK54_RS15020	0.11	-0.2
3,320,664	-		LRK54_RS15020	0.11	+0.8
3,320,664	-		LRK54_RS15020	0.11	-0.2
3,320,664	-		LRK54_RS15020	0.11	-2.2
3,320,664	-		LRK54_RS15020	0.11	-3.0
3,320,664	-		LRK54_RS15020	0.11	-3.6
3,320,664	-		LRK54_RS15020	0.11	+0.1
3,320,664	-		LRK54_RS15020	0.11	-1.0
3,320,664	-		LRK54_RS15020	0.11	-1.4
3,320,664	-		LRK54_RS15020	0.11	-3.4
3,320,664	-		LRK54_RS15020	0.11	+0.8
3,320,664	-		LRK54_RS15020	0.11	-1.8
3,320,664	-		LRK54_RS15020	0.11	-2.5
3,320,664	-		LRK54_RS15020	0.11	-2.1
3,320,664	-		LRK54_RS15020	0.11	+0.2
3,320,664	-		LRK54_RS15020	0.11	-0.8
3,320,664	-		LRK54_RS15020	0.11	-0.2
3,320,664	-		LRK54_RS15020	0.11	-0.2
3,320,696	+		LRK54_RS15020	0.13	-3.1
3,320,696	+		LRK54_RS15020	0.13	+1.8
3,320,696	+		LRK54_RS15020	0.13	+0.2
3,320,696	+		LRK54_RS15020	0.13	-0.8
3,320,696	+		LRK54_RS15020	0.13	-1.5
3,320,696	+		LRK54_RS15020	0.13	+0.2
3,320,696	+		LRK54_RS15020	0.13	-0.2
3,320,696	+		LRK54_RS15020	0.13	-1.4
3,320,697	-		LRK54_RS15020	0.13	+0.2
3,320,697	-		LRK54_RS15020	0.13	-4.0
3,320,697	-		LRK54_RS15020	0.13	-1.8
3,320,697	-		LRK54_RS15020	0.13	-1.4
3,320,697	-		LRK54_RS15020	0.13	+0.8
3,320,697	-		LRK54_RS15020	0.13	-1.5
3,320,697	-		LRK54_RS15020	0.13	-2.8
3,320,697	-		LRK54_RS15020	0.13	-0.6
3,320,697	-		LRK54_RS15020	0.13	-2.5
3,320,697	-		LRK54_RS15020	0.13	-2.9
3,320,697	-		LRK54_RS15020	0.13	-1.0
3,320,697	-		LRK54_RS15020	0.13	-2.2
3,320,834	+		LRK54_RS15020	0.19	-2.4
3,320,834	+		LRK54_RS15020	0.19	-1.4
3,320,834	+		LRK54_RS15020	0.19	-1.0
3,320,834	+		LRK54_RS15020	0.19	-1.3
3,320,835	-		LRK54_RS15020	0.19	-2.1
3,320,835	-		LRK54_RS15020	0.19	-4.0
3,320,835	-		LRK54_RS15020	0.19	-1.8
3,320,835	-		LRK54_RS15020	0.19	+0.2
3,320,951	+		LRK54_RS15020	0.25	+0.7
3,320,952	-		LRK54_RS15020	0.25	-4.0
3,321,080	+		LRK54_RS15020	0.31	+1.2
3,321,080	+		LRK54_RS15020	0.31	-2.5
3,321,080	+		LRK54_RS15020	0.31	-2.5
3,321,080	+		LRK54_RS15020	0.31	-2.8
3,321,080	+		LRK54_RS15020	0.31	-2.7
3,321,080	+		LRK54_RS15020	0.31	-2.8
3,321,080	+		LRK54_RS15020	0.31	-1.5
3,321,080	+		LRK54_RS15020	0.31	-1.8
3,321,080	+		LRK54_RS15020	0.31	-2.3
3,321,080	+		LRK54_RS15020	0.31	-2.4
3,321,080	+		LRK54_RS15020	0.31	-1.0
3,321,080	+		LRK54_RS15020	0.31	-0.8
3,321,080	+		LRK54_RS15020	0.31	-0.8
3,321,080	+		LRK54_RS15020	0.31	-2.9
3,321,081	-		LRK54_RS15020	0.31	+0.2
3,321,081	-		LRK54_RS15020	0.31	-0.5
3,321,081	-		LRK54_RS15020	0.31	+0.2
3,321,081	-		LRK54_RS15020	0.31	-1.5
3,321,081	-		LRK54_RS15020	0.31	+0.5
3,321,081	-		LRK54_RS15020	0.31	-0.2
3,321,081	-		LRK54_RS15020	0.31	-2.0
3,321,081	-		LRK54_RS15020	0.31	-1.5
3,321,081	-		LRK54_RS15020	0.31	-0.8
3,321,081	-		LRK54_RS15020	0.31	-1.0
3,321,081	-		LRK54_RS15020	0.31	-0.5
3,321,081	-		LRK54_RS15020	0.31	-1.4
3,321,081	-		LRK54_RS15020	0.31	-0.8
3,321,081	-		LRK54_RS15020	0.31	-1.7
3,321,081	-		LRK54_RS15020	0.31	+0.2
3,321,081	-		LRK54_RS15020	0.31	+0.2
3,321,081	-		LRK54_RS15020	0.31	-1.5
3,321,081	-		LRK54_RS15020	0.31	-1.0
3,321,104	+		LRK54_RS15020	0.32	-1.7
3,321,104	+		LRK54_RS15020	0.32	-1.8
3,321,104	+		LRK54_RS15020	0.32	-1.2
3,321,104	+		LRK54_RS15020	0.32	-2.4
3,321,104	+		LRK54_RS15020	0.32	-1.2
3,321,104	+		LRK54_RS15020	0.32	-0.4
3,321,104	+		LRK54_RS15020	0.32	-0.2
3,321,104	+		LRK54_RS15020	0.32	-2.8
3,321,104	+		LRK54_RS15020	0.32	+0.8
3,321,104	+		LRK54_RS15020	0.32	-2.7
3,321,104	+		LRK54_RS15020	0.32	-2.2
3,321,104	+		LRK54_RS15020	0.32	+0.8
3,321,104	+		LRK54_RS15020	0.32	-1.0
3,321,104	+		LRK54_RS15020	0.32	-0.8
3,321,105	-		LRK54_RS15020	0.32	-1.0
3,321,105	-		LRK54_RS15020	0.32	-1.7
3,321,105	-		LRK54_RS15020	0.32	-1.4
3,321,105	-		LRK54_RS15020	0.32	+0.8
3,321,105	-		LRK54_RS15020	0.32	-1.0
3,321,105	-		LRK54_RS15020	0.32	-2.1
3,321,105	-		LRK54_RS15020	0.32	-1.2
3,321,105	-		LRK54_RS15020	0.32	-2.6
3,321,105	-		LRK54_RS15020	0.32	+1.8
3,321,105	-		LRK54_RS15020	0.32	-2.3
3,321,105	-		LRK54_RS15020	0.32	-1.2
3,321,105	-		LRK54_RS15020	0.32	-0.7
3,321,105	-		LRK54_RS15020	0.32	-2.0
3,321,105	-		LRK54_RS15020	0.32	-2.5
3,321,105	-		LRK54_RS15020	0.32	+0.8
3,321,105	-		LRK54_RS15020	0.32	-0.8
3,321,105	-		LRK54_RS15020	0.32	-1.9
3,321,105	-		LRK54_RS15020	0.32	-3.0
3,321,105	-		LRK54_RS15020	0.32	-1.2
3,321,105	-		LRK54_RS15020	0.32	-0.2
3,321,105	-		LRK54_RS15020	0.32	-1.2
3,321,128	+		LRK54_RS15020	0.33	-2.6
3,321,128	+		LRK54_RS15020	0.33	-2.1
3,321,129	-		LRK54_RS15020	0.33	-1.8
3,321,129	-		LRK54_RS15020	0.33	+0.8
3,321,129	-		LRK54_RS15020	0.33	-1.2
3,321,129	-		LRK54_RS15020	0.33	+0.2
3,321,129	-		LRK54_RS15020	0.33	-0.2
3,321,189	-		LRK54_RS15020	0.36	-0.5
3,321,189	-		LRK54_RS15020	0.36	-0.5
3,321,203	+		LRK54_RS15020	0.37	-0.5
3,321,203	+		LRK54_RS15020	0.37	-0.9
3,321,203	+		LRK54_RS15020	0.37	-1.2
3,321,203	+		LRK54_RS15020	0.37	-3.4
3,321,203	+		LRK54_RS15020	0.37	-2.7
3,321,203	+		LRK54_RS15020	0.37	-2.3
3,321,204	-		LRK54_RS15020	0.37	-2.4
3,321,204	-		LRK54_RS15020	0.37	-1.2
3,321,204	-		LRK54_RS15020	0.37	-3.3