Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11950

Experiment: R2A with Chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 250 mM
2,649,072	+		LRK54_RS11945	0.57	+0.7
2,649,072	+		LRK54_RS11945	0.57	-0.3
2,649,072	+		LRK54_RS11945	0.57	+0.1
2,649,073	-		LRK54_RS11945	0.57	-0.0
2,649,198	+		LRK54_RS11945	0.66	-0.7
2,649,198	+		LRK54_RS11945	0.66	-0.5
2,649,198	+		LRK54_RS11945	0.66	-0.7
2,649,198	+		LRK54_RS11945	0.66	+0.7
2,649,198	+		LRK54_RS11945	0.66	-0.7
2,649,198	+		LRK54_RS11945	0.66	-2.3
2,649,198	+		LRK54_RS11945	0.66	+0.6
2,649,198	+		LRK54_RS11945	0.66	+0.0
2,649,199	-		LRK54_RS11945	0.66	-1.6
2,649,199	-		LRK54_RS11945	0.66	-0.7
2,649,199	-		LRK54_RS11945	0.66	-0.7
2,649,199	-		LRK54_RS11945	0.66	-1.2
2,649,199	-		LRK54_RS11945	0.66	+0.6
2,649,199	-		LRK54_RS11945	0.66	+0.4
2,649,199	-		LRK54_RS11945	0.66	-0.7
2,649,199	-		LRK54_RS11945	0.66	-0.8
2,649,199	-		LRK54_RS11945	0.66	+0.7
2,649,201	+		LRK54_RS11945	0.66	+0.3
2,649,201	+		LRK54_RS11945	0.66	+0.8
2,649,201	+		LRK54_RS11945	0.66	+0.3
2,649,201	+		LRK54_RS11945	0.66	+0.3
2,649,201	+		LRK54_RS11945	0.66	-0.5
2,649,201	+		LRK54_RS11945	0.66	-1.5
2,649,201	+		LRK54_RS11945	0.66	-0.6
2,649,201	+		LRK54_RS11945	0.66	+0.7
2,649,201	+		LRK54_RS11945	0.66	+0.3
2,649,201	+		LRK54_RS11945	0.66	+0.1
2,649,201	+		LRK54_RS11945	0.66	+0.5
2,649,201	+		LRK54_RS11945	0.66	-0.2
2,649,201	+		LRK54_RS11945	0.66	+0.7
2,649,201	+		LRK54_RS11945	0.66	+0.3
2,649,201	+		LRK54_RS11945	0.66	+1.0
2,649,201	+		LRK54_RS11945	0.66	+1.0
2,649,201	+		LRK54_RS11945	0.66	-0.4
2,649,201	+		LRK54_RS11945	0.66	-0.2
2,649,202	-		LRK54_RS11945	0.66	+0.6
2,649,202	-		LRK54_RS11945	0.66	-0.3
2,649,202	-		LRK54_RS11945	0.66	+0.2
2,649,202	-		LRK54_RS11945	0.66	-1.5
2,649,202	-		LRK54_RS11945	0.66	-0.9
2,649,202	-		LRK54_RS11945	0.66	+1.8
2,649,202	-		LRK54_RS11945	0.66	+0.8
2,649,202	-		LRK54_RS11945	0.66	+0.8
2,649,202	-		LRK54_RS11945	0.66	+1.0
2,649,466	-		LRK54_RS11945	0.86	+0.8
2,649,466	-		LRK54_RS11945	0.86	-0.3
2,649,642	+				+1.8
2,649,642	+				-1.6
2,649,643	-				-0.0
2,649,643	-				+0.5
2,649,734	+				-0.2
2,649,734	+				+0.3
2,649,734	+				+0.6
2,649,735	-				-1.3
2,649,735	-				+1.3
2,649,735	-				+0.4
2,649,735	-				+1.1
2,649,735	-				+0.7
2,649,735	-				-0.3
2,649,755	+				-0.2
2,649,755	+				-0.8
2,649,755	+				+0.7
2,649,755	+				+0.6
2,649,755	+				+0.2
2,649,755	+				-1.5
2,649,755	+				-0.6
2,649,755	+				-0.2
2,649,755	+				-0.8
2,649,755	+				+0.1
2,649,755	+				+0.0
2,649,755	+				+0.0
2,649,755	+				-0.4
2,649,755	+				+1.2
2,649,755	+				+0.8
2,649,755	+				-1.2
2,649,756	-				-1.5
2,649,756	-				+0.7
2,649,756	-				-0.2
2,649,756	-				-0.2
2,649,756	-				-1.2
2,649,756	-				+1.6
2,649,756	-				+0.2
2,649,756	-				+1.6
2,649,756	-				+1.6
2,649,756	-				-0.8
2,649,756	-				+0.5
2,649,756	-				+0.1
2,649,756	-				-0.6
2,649,756	-				-0.1
2,649,756	-				-0.5
2,649,756	-				+0.7
2,649,756	-				+0.3
2,649,830	+				-0.4
2,649,830	+				-1.3
2,649,830	+				+0.3
2,649,830	+				-0.1
2,649,926	+		LRK54_RS11950	0.14	-0.0
2,649,926	+		LRK54_RS11950	0.14	-1.1
2,649,926	+		LRK54_RS11950	0.14	+1.5
2,649,926	+		LRK54_RS11950	0.14	+0.5
2,649,926	+		LRK54_RS11950	0.14	-0.5
2,649,926	+		LRK54_RS11950	0.14	+0.1
2,649,926	+		LRK54_RS11950	0.14	+0.7
2,649,927	-		LRK54_RS11950	0.14	-1.7
2,649,927	-		LRK54_RS11950	0.14	+0.8
2,649,927	-		LRK54_RS11950	0.14	+0.4
2,649,927	-		LRK54_RS11950	0.14	+0.0
2,649,927	-		LRK54_RS11950	0.14	-0.6
2,649,983	+		LRK54_RS11950	0.18	-0.5
2,649,983	+		LRK54_RS11950	0.18	+0.3
2,649,983	+		LRK54_RS11950	0.18	+0.6
2,649,984	-		LRK54_RS11950	0.18	+0.6
2,649,984	-		LRK54_RS11950	0.18	-0.6
2,649,984	-		LRK54_RS11950	0.18	+0.1
2,649,984	-		LRK54_RS11950	0.18	+1.0
2,649,984	-		LRK54_RS11950	0.18	-0.2
2,650,046	+		LRK54_RS11950	0.23	-0.1
2,650,046	+		LRK54_RS11950	0.23	-0.1
2,650,047	-		LRK54_RS11950	0.23	+0.8
2,650,172	+		LRK54_RS11950	0.32	+1.3
2,650,172	+		LRK54_RS11950	0.32	+0.4
2,650,289	+		LRK54_RS11950	0.40	+1.3
2,650,289	+		LRK54_RS11950	0.40	-0.6
2,650,289	+		LRK54_RS11950	0.40	+1.0
2,650,289	+		LRK54_RS11950	0.40	-1.3
2,650,289	+		LRK54_RS11950	0.40	-0.7
2,650,289	+		LRK54_RS11950	0.40	-0.6
2,650,289	+		LRK54_RS11950	0.40	-0.4
2,650,289	+		LRK54_RS11950	0.40	+0.8
2,650,289	+		LRK54_RS11950	0.40	-0.2
2,650,289	+		LRK54_RS11950	0.40	-0.5
2,650,289	+		LRK54_RS11950	0.40	-0.6
2,650,289	+		LRK54_RS11950	0.40	-1.0
2,650,289	+		LRK54_RS11950	0.40	+0.6
2,650,289	+		LRK54_RS11950	0.40	-1.4
2,650,289	+		LRK54_RS11950	0.40	+2.1
2,650,289	+		LRK54_RS11950	0.40	+0.2
2,650,289	+		LRK54_RS11950	0.40	-0.1
2,650,289	+		LRK54_RS11950	0.40	-0.5
2,650,289	+		LRK54_RS11950	0.40	+0.5
2,650,290	-		LRK54_RS11950	0.40	-0.3
2,650,290	-		LRK54_RS11950	0.40	-0.3
2,650,290	-		LRK54_RS11950	0.40	+0.3
2,650,290	-		LRK54_RS11950	0.40	+0.8
2,650,290	-		LRK54_RS11950	0.40	-0.2
2,650,290	-		LRK54_RS11950	0.40	+0.1
2,650,290	-		LRK54_RS11950	0.40	-0.1
2,650,290	-		LRK54_RS11950	0.40	+1.1
2,650,290	-		LRK54_RS11950	0.40	-0.6
2,650,290	-		LRK54_RS11950	0.40	+0.6
2,650,290	-		LRK54_RS11950	0.40	+0.0
2,650,290	-		LRK54_RS11950	0.40	+0.3
2,650,290	-		LRK54_RS11950	0.40	-0.6
2,650,293	+		LRK54_RS11950	0.40	+1.8
2,650,293	+		LRK54_RS11950	0.40	-0.1
2,650,293	+		LRK54_RS11950	0.40	+0.6
2,650,293	+		LRK54_RS11950	0.40	+1.4
2,650,293	+		LRK54_RS11950	0.40	-0.6
2,650,293	+		LRK54_RS11950	0.40	+0.5
2,650,293	+		LRK54_RS11950	0.40	-0.2
2,650,293	+		LRK54_RS11950	0.40	-0.3
2,650,293	+		LRK54_RS11950	0.40	-0.2
2,650,293	+		LRK54_RS11950	0.40	-0.1
2,650,293	+		LRK54_RS11950	0.40	+1.5
2,650,293	+		LRK54_RS11950	0.40	+0.5
2,650,294	-		LRK54_RS11950	0.40	-0.9
2,650,294	-		LRK54_RS11950	0.40	-0.4
2,650,294	-		LRK54_RS11950	0.40	+0.0
2,650,294	-		LRK54_RS11950	0.40	-1.6
2,650,294	-		LRK54_RS11950	0.40	-1.6
2,650,294	-		LRK54_RS11950	0.40	-0.1
2,650,294	-		LRK54_RS11950	0.40	-0.9
2,650,294	-		LRK54_RS11950	0.40	+0.0
2,650,294	-		LRK54_RS11950	0.40	+1.3
2,650,294	-		LRK54_RS11950	0.40	+1.3
2,650,294	-		LRK54_RS11950	0.40	+0.3
2,650,294	-		LRK54_RS11950	0.40	-0.1
2,650,294	-		LRK54_RS11950	0.40	+1.7
2,650,294	-		LRK54_RS11950	0.40	-0.2
2,650,294	-		LRK54_RS11950	0.40	-0.2
2,650,350	-		LRK54_RS11950	0.44	+0.4
2,650,350	-		LRK54_RS11950	0.44	+0.1
2,650,350	-		LRK54_RS11950	0.44	+0.1
2,650,394	+		LRK54_RS11950	0.48	-1.2
2,650,394	+		LRK54_RS11950	0.48	-0.2
2,650,394	+		LRK54_RS11950	0.48	+0.3
2,650,395	-		LRK54_RS11950	0.48	+0.8
2,650,395	-		LRK54_RS11950	0.48	+0.3
2,650,395	-		LRK54_RS11950	0.48	+0.7
2,650,395	-		LRK54_RS11950	0.48	+0.7
2,650,395	-		LRK54_RS11950	0.48	-0.5
2,650,500	+		LRK54_RS11950	0.55	-0.0
2,650,500	+		LRK54_RS11950	0.55	+0.2
2,650,694	+		LRK54_RS11950	0.69	+0.3
2,650,694	+		LRK54_RS11950	0.69	+0.1
2,650,694	+		LRK54_RS11950	0.69	-1.4
2,650,694	+		LRK54_RS11950	0.69	+0.2
2,650,694	+		LRK54_RS11950	0.69	-0.1
2,650,694	+		LRK54_RS11950	0.69	-0.5
2,650,694	+		LRK54_RS11950	0.69	-2.0
2,650,695	-		LRK54_RS11950	0.69	-0.3
2,650,695	-		LRK54_RS11950	0.69	-0.3
2,650,718	+		LRK54_RS11950	0.71	-2.4
2,650,718	+		LRK54_RS11950	0.71	+0.6
2,650,719	-		LRK54_RS11950	0.71	+0.8
2,650,719	-		LRK54_RS11950	0.71	+0.5
2,650,829	+		LRK54_RS11950	0.79	+2.2
2,650,829	+		LRK54_RS11950	0.79	+1.4
2,650,829	+		LRK54_RS11950	0.79	-0.7
2,650,829	+		LRK54_RS11950	0.79	+0.3
2,650,829	+		LRK54_RS11950	0.79	-0.5
2,650,829	+		LRK54_RS11950	0.79	-1.1
2,650,829	+		LRK54_RS11950	0.79	-1.0
2,650,829	+		LRK54_RS11950	0.79	-1.2
2,650,829	+		LRK54_RS11950	0.79	+0.3
2,650,829	+		LRK54_RS11950	0.79	-1.0
2,650,829	+		LRK54_RS11950	0.79	-0.2
2,650,829	+		LRK54_RS11950	0.79	-0.6
2,650,829	+		LRK54_RS11950	0.79	-0.1
2,650,829	+		LRK54_RS11950	0.79	-1.0
2,650,829	+		LRK54_RS11950	0.79	-0.9
2,650,829	+		LRK54_RS11950	0.79	-0.2
2,650,829	+		LRK54_RS11950	0.79	+0.2
2,650,829	+		LRK54_RS11950	0.79	+0.3
2,650,829	+		LRK54_RS11950	0.79	-2.2
2,650,829	+		LRK54_RS11950	0.79	+0.9
2,650,830	-		LRK54_RS11950	0.79	+0.3
2,650,830	-		LRK54_RS11950	0.79	-2.5
2,650,830	-		LRK54_RS11950	0.79	+0.0
2,650,830	-		LRK54_RS11950	0.79	-0.5
2,650,830	-		LRK54_RS11950	0.79	-0.0
2,650,830	-		LRK54_RS11950	0.79	-0.9
2,650,830	-		LRK54_RS11950	0.79	-0.5
2,650,830	-		LRK54_RS11950	0.79	+1.1
2,650,830	-		LRK54_RS11950	0.79	+0.8
2,650,830	-		LRK54_RS11950	0.79	+0.1
2,650,830	-		LRK54_RS11950	0.79	-1.0
2,650,830	-		LRK54_RS11950	0.79	-0.0
2,650,830	-		LRK54_RS11950	0.79	+0.6
2,650,913	+		LRK54_RS11950	0.85	-0.5
2,650,913	+		LRK54_RS11950	0.85	-0.3
2,650,913	+		LRK54_RS11950	0.85	+0.5
2,650,913	+		LRK54_RS11950	0.85	-0.9
2,650,913	+		LRK54_RS11950	0.85	-1.2
2,650,913	+		LRK54_RS11950	0.85	+1.5
2,650,913	+		LRK54_RS11950	0.85	-0.7
2,650,914	-		LRK54_RS11950	0.85	-0.2
2,650,914	-		LRK54_RS11950	0.85	-0.5
2,650,914	-		LRK54_RS11950	0.85	+0.3
2,650,914	-		LRK54_RS11950	0.85	+1.6
2,650,914	-		LRK54_RS11950	0.85	-0.7
2,650,914	-		LRK54_RS11950	0.85	-0.2
2,650,914	-		LRK54_RS11950	0.85	+0.3
2,650,914	-		LRK54_RS11950	0.85	-1.0
2,650,914	-		LRK54_RS11950	0.85	-0.7
2,651,302	+				+0.4
2,651,302	+				+0.1
2,651,302	+				+1.3
2,651,302	+				-0.1
2,651,302	+				-0.2
2,651,302	+				+0.1
2,651,302	+				+0.9
2,651,302	+				+1.3
2,651,302	+				+1.6
2,651,302	+				-1.3
2,651,303	-				-1.7
2,651,303	-				+0.3
2,651,303	-				-0.4
2,651,303	-				-0.9
2,651,303	-				-0.1
2,651,449	+		LRK54_RS11955	0.16	+0.8
2,651,449	+		LRK54_RS11955	0.16	-0.3
2,651,449	+		LRK54_RS11955	0.16	+0.0
2,651,449	+		LRK54_RS11955	0.16	+0.8
2,651,449	+		LRK54_RS11955	0.16	-0.9
2,651,449	+		LRK54_RS11955	0.16	+0.6
2,651,449	+		LRK54_RS11955	0.16	+0.0
2,651,449	+		LRK54_RS11955	0.16	+1.8
2,651,449	+		LRK54_RS11955	0.16	+0.8
2,651,449	+		LRK54_RS11955	0.16	+1.6
2,651,449	+		LRK54_RS11955	0.16	+1.8
2,651,449	+		LRK54_RS11955	0.16	-1.1
2,651,449	+		LRK54_RS11955	0.16	-1.0
2,651,449	+		LRK54_RS11955	0.16	+0.3
2,651,449	+		LRK54_RS11955	0.16	+0.3
2,651,450	-		LRK54_RS11955	0.16	+0.5
2,651,450	-		LRK54_RS11955	0.16	+0.8
2,651,450	-		LRK54_RS11955	0.16	+0.6
2,651,450	-		LRK54_RS11955	0.16	-1.1
2,651,450	-		LRK54_RS11955	0.16	+0.4
2,651,450	-		LRK54_RS11955	0.16	-0.1
2,651,450	-		LRK54_RS11955	0.16	+0.2
2,651,450	-		LRK54_RS11955	0.16	-0.4
2,651,450	-		LRK54_RS11955	0.16	-0.5
2,651,450	-		LRK54_RS11955	0.16	+0.3
2,651,450	-		LRK54_RS11955	0.16	-0.2
2,651,450	-		LRK54_RS11955	0.16	-0.7
2,651,450	-		LRK54_RS11955	0.16	+0.9
2,651,450	-		LRK54_RS11955	0.16	-0.2
2,651,455	+		LRK54_RS11955	0.17	-0.9
2,651,455	+		LRK54_RS11955	0.17	-0.8
2,651,455	+		LRK54_RS11955	0.17	+0.8
2,651,455	+		LRK54_RS11955	0.17	-1.4
2,651,455	+		LRK54_RS11955	0.17	-0.9
2,651,455	+		LRK54_RS11955	0.17	+0.1
2,651,455	+		LRK54_RS11955	0.17	+0.8
2,651,455	+		LRK54_RS11955	0.17	-0.5
2,651,455	+		LRK54_RS11955	0.17	-0.6
2,651,455	+		LRK54_RS11955	0.17	-0.6
2,651,455	+		LRK54_RS11955	0.17	+1.6
2,651,455	+		LRK54_RS11955	0.17	+0.0
2,651,455	+		LRK54_RS11955	0.17	+0.3
2,651,455	+		LRK54_RS11955	0.17	-0.1
2,651,455	+		LRK54_RS11955	0.17	+0.8
2,651,455	+		LRK54_RS11955	0.17	-0.6
2,651,455	+		LRK54_RS11955	0.17	+0.6
2,651,455	+		LRK54_RS11955	0.17	-0.0
2,651,455	+		LRK54_RS11955	0.17	+1.2
2,651,455	+		LRK54_RS11955	0.17	-0.3
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