Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03675

Experiment: PYE with Sisomicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Sisomicin 0.004 mg/ml
3,833,320	+				-1.8
3,833,320	+				+0.8
3,833,328	-				+1.2
3,833,351	-				-0.4
3,833,370	+				-1.9
3,833,376	-				+0.6
3,833,376	-				+0.4
3,833,376	-				+1.3
3,833,378	-				+1.1
3,833,449	-		CCNA_03673	0.15	+1.4
3,833,477	+		CCNA_03673	0.22	+0.2
3,833,477	+		CCNA_03673	0.22	+1.3
3,833,477	+		CCNA_03673	0.22	+0.8
3,833,485	-		CCNA_03673	0.24	+0.6
3,833,485	-		CCNA_03673	0.24	+0.5
3,833,485	-		CCNA_03673	0.24	+0.3
3,833,543	+		CCNA_03673	0.39	-0.2
3,833,545	-		CCNA_03673	0.39	+1.6
3,833,547	+		CCNA_03673	0.40	-2.2
3,833,623	-		CCNA_03673	0.58	+1.1
3,833,625	+		CCNA_03673	0.59	-1.2
3,833,633	-		CCNA_03673	0.61	+0.9
3,833,633	-		CCNA_03673	0.61	+0.7
3,833,633	-		CCNA_03673	0.61	+1.4
3,833,633	-		CCNA_03673	0.61	+0.3
3,833,668	+		CCNA_03673	0.70	+0.5
3,833,680	-		CCNA_03673	0.73	+1.1
3,833,685	-		CCNA_03673	0.74	+0.9
3,833,756	+				-0.2
3,833,839	+		CCNA_03674	0.15	+1.8
3,833,840	+		CCNA_03674	0.16	-0.8
3,833,864	+		CCNA_03674	0.23	-0.9
3,833,872	-		CCNA_03674	0.25	+1.2
3,833,892	+		CCNA_03674	0.31	+0.4
3,833,892	+		CCNA_03674	0.31	+1.8
3,833,892	+		CCNA_03674	0.31	-1.0
3,833,892	+		CCNA_03674	0.31	-1.2
3,833,900	-		CCNA_03674	0.33	+2.0
3,833,900	-		CCNA_03674	0.33	+0.8
3,833,900	-		CCNA_03674	0.33	+1.3
3,833,900	-		CCNA_03674	0.33	+1.5
3,833,905	-		CCNA_03674	0.34	+1.8
3,833,916	-		CCNA_03674	0.38	+2.0
3,833,953	-		CCNA_03674	0.48	+2.3
3,833,953	-		CCNA_03674	0.48	+1.5
3,833,953	-		CCNA_03674	0.48	-0.2
3,833,959	+		CCNA_03674	0.50	+1.3
3,834,002	-		CCNA_03674	0.63	+1.2
3,834,048	-		CCNA_03674	0.76	+1.8
3,834,084	+		CCNA_03674	0.86	+1.5
3,834,084	+		CCNA_03674	0.86	+0.8
3,834,092	-		CCNA_03674	0.89	+0.9
3,834,092	-		CCNA_03674	0.89	+0.7
3,834,092	-		CCNA_03674	0.89	+0.5
3,834,092	-		CCNA_03674	0.89	+1.4
3,834,092	-		CCNA_03674	0.89	+1.7
3,834,092	-		CCNA_03674	0.89	+0.8
3,834,092	-		CCNA_03674	0.89	+2.8
3,834,092	-		CCNA_03674	0.89	+0.2
3,834,126	+				-1.0
3,834,196	-				+1.3
3,834,196	-				+2.0
3,834,200	+				-0.3
3,834,200	+				-1.8
3,834,207	+				-0.5
3,834,208	-				+1.4
3,834,208	-				+2.6
3,834,227	-				-0.2
3,834,232	+				-1.7
3,834,239	+				+0.5
3,834,242	-				-0.2
3,834,249	+				-1.5
3,834,249	+				+1.1
3,834,249	+				-0.2
3,834,257	-				-2.3
3,834,257	-				+0.0
3,834,306	+				-0.8
3,834,328	+				-1.5
3,834,328	+				-2.1
3,834,336	-				-1.2
3,834,343	+				-0.7
3,834,343	+				-0.9
3,834,343	+				+1.1
3,834,343	+				-1.2
3,834,343	+				+1.4
3,834,351	-				-0.5
3,834,351	-				-0.8
3,834,359	+				-3.3
3,834,390	+				-1.0
3,834,390	+				-1.5
3,834,390	+				-2.0
3,834,412	-				-2.7
3,834,439	+				-1.1
3,834,439	+				-0.2
3,834,447	-				+0.8
3,834,488	+		CCNA_03675	0.10	-2.2
3,834,516	-				+0.8
3,834,530	+		CCNA_03675	0.13	-1.8
3,834,530	+		CCNA_03675	0.13	-1.2
3,834,543	+		CCNA_03675	0.13	-1.2
3,834,549	-		CCNA_03675	0.14	-1.0
3,834,578	+		CCNA_03675	0.15	+2.0
3,834,699	-		CCNA_03675	0.22	-2.7
3,834,720	+		CCNA_03675	0.23	-3.8
3,834,727	+		CCNA_03675	0.23	+1.8
3,834,734	+		CCNA_03675	0.24	-3.7
3,834,771	+		CCNA_03675	0.26	-1.9
3,834,821	-		CCNA_03675	0.29	-2.3
3,834,825	+		CCNA_03675	0.29	-2.7
3,834,885	-		CCNA_03675	0.32	-1.1
3,834,890	+		CCNA_03675	0.32	-0.2
3,834,924	-		CCNA_03675	0.34	-0.5
3,834,953	+		CCNA_03675	0.36	-0.6
3,835,013	+		CCNA_03675	0.39	+2.8
3,835,021	-		CCNA_03675	0.39	+0.8
3,835,021	-		CCNA_03675	0.39	-0.5
3,835,021	-		CCNA_03675	0.39	-0.8
3,835,037	+		CCNA_03675	0.40	-2.6
3,835,072	+		CCNA_03675	0.42	-1.0
3,835,072	+		CCNA_03675	0.42	-1.5
3,835,080	-		CCNA_03675	0.43	-0.1
3,835,080	-		CCNA_03675	0.43	+0.1
3,835,080	-		CCNA_03675	0.43	-0.3
3,835,082	+		CCNA_03675	0.43	-1.8
3,835,095	-		CCNA_03675	0.43	-2.2
3,835,097	-		CCNA_03675	0.44	-2.5
3,835,120	+		CCNA_03675	0.45	-3.5
3,835,123	-		CCNA_03675	0.45	+1.8
3,835,139	+		CCNA_03675	0.46	-1.8
3,835,140	+		CCNA_03675	0.46	-3.1
3,835,174	+		CCNA_03675	0.48	-2.8
3,835,178	-		CCNA_03675	0.48	-0.2
3,835,180	+		CCNA_03675	0.48	-0.7
3,835,182	-		CCNA_03675	0.48	-3.1
3,835,217	+		CCNA_03675	0.50	-1.4
3,835,222	-		CCNA_03675	0.50	-1.5
3,835,236	+		CCNA_03675	0.51	-3.6
3,835,236	+		CCNA_03675	0.51	-0.4
3,835,247	+		CCNA_03675	0.52	-2.7
3,835,268	+		CCNA_03675	0.53	-3.5
3,835,287	-		CCNA_03675	0.54	-1.0
3,835,334	-		CCNA_03675	0.56	-2.4
3,835,334	-		CCNA_03675	0.56	-2.0
3,835,340	+		CCNA_03675	0.57	-4.2
3,835,371	+		CCNA_03675	0.58	+0.8
3,835,371	+		CCNA_03675	0.58	-1.5
3,835,376	+		CCNA_03675	0.59	-2.0
3,835,379	-		CCNA_03675	0.59	-0.9
3,835,379	-		CCNA_03675	0.59	-2.3
3,835,436	-		CCNA_03675	0.62	-1.5
3,835,447	+				+0.8
3,835,449	+		CCNA_03675	0.63	-1.1
3,835,462	-		CCNA_03675	0.63	-2.3
3,835,463	-		CCNA_03675	0.63	-2.5
3,835,480	+		CCNA_03675	0.64	-0.4
3,835,487	-		CCNA_03675	0.65	-0.6
3,835,489	+		CCNA_03675	0.65	+1.8
3,835,498	+		CCNA_03675	0.65	+1.9
3,835,498	-		CCNA_03675	0.65	-0.9
3,835,525	+		CCNA_03675	0.67	+3.0
3,835,532	-		CCNA_03675	0.67	-0.7
3,835,553	+		CCNA_03675	0.68	-2.2
3,835,589	-		CCNA_03675	0.70	-0.5
3,835,591	+		CCNA_03675	0.70	-1.4
3,835,594	-		CCNA_03675	0.71	+1.8
3,835,597	+		CCNA_03675	0.71	-0.5
3,835,623	-		CCNA_03675	0.72	+1.3
3,835,626	-		CCNA_03675	0.72	-0.4
3,835,666	+		CCNA_03675	0.74	-0.1
3,835,684	-		CCNA_03675	0.75	-1.5
3,835,698	-		CCNA_03675	0.76	+0.2
3,835,714	+		CCNA_03675	0.77	+0.3
3,835,722	-		CCNA_03675	0.78	-0.8
3,835,722	-		CCNA_03675	0.78	+1.4
3,835,722	-		CCNA_03675	0.78	+0.2
3,835,847	+		CCNA_03675	0.84	-3.1
3,835,847	+		CCNA_03675	0.84	-3.3
3,835,847	+		CCNA_03675	0.84	-2.3
3,835,855	-		CCNA_03675	0.85	+1.8
3,835,863	+		CCNA_03675	0.85	-1.8
3,835,871	-		CCNA_03675	0.86	-0.2
3,835,939	+		CCNA_03675	0.89	-1.0
3,835,947	-		CCNA_03675	0.90	-2.1
3,835,949	+		CCNA_03675	0.90	-2.7
3,835,971	-				-3.2
3,836,042	+				-2.1
3,836,077	+				+1.1
3,836,179	-		CCNA_03676	0.11	-1.0
3,836,190	+		CCNA_03676	0.13	-1.2
3,836,198	-		CCNA_03676	0.15	-0.8
3,836,209	+		CCNA_03676	0.18	-1.2
3,836,217	-		CCNA_03676	0.19	-3.1
3,836,217	-		CCNA_03676	0.19	-1.7
3,836,317	+		CCNA_03676	0.42	-2.8
3,836,325	-		CCNA_03676	0.44	-1.4
3,836,341	+		CCNA_03676	0.47	-0.8
3,836,397	+		CCNA_03676	0.60	-1.4
3,836,405	-		CCNA_03676	0.62	-0.2
3,836,460	-				+0.8
3,836,462	+		CCNA_03676	0.75	-2.8
3,836,465	-		CCNA_03676	0.75	-0.2
3,836,475	-		CCNA_03676	0.77	-1.0
3,836,510	+		CCNA_03676	0.85	-3.2
3,836,510	+		CCNA_03676	0.85	-3.6
3,836,510	+		CCNA_03676	0.85	-3.7
3,836,518	-		CCNA_03676	0.87	+0.2
3,836,518	-		CCNA_03676	0.87	+0.8
3,836,522	-		CCNA_03676	0.88	-3.5
3,836,528	+		CCNA_03676	0.89	-3.2
3,836,555	-				-0.2
3,836,568	+				-1.5
3,836,568	+				+1.0
3,836,568	+				+0.5
3,836,586	+				-2.0
3,836,600	+				-1.0
3,836,608	-				-0.2
3,836,608	-				+1.8
3,836,608	-				-1.2
3,836,608	-				-0.3
3,836,608	-				-0.9
3,836,632	-				+0.6
3,836,633	-				-0.2
3,836,668	-				+0.3
3,836,700	+				+0.2
3,836,725	+		CCNA_03677	0.11	+0.6
3,836,787	-		CCNA_03677	0.16	+1.0
3,836,795	+		CCNA_03677	0.16	+0.1
3,836,828	-		CCNA_03677	0.19	+0.1
3,836,833	-		CCNA_03677	0.19	-0.5
3,836,905	-		CCNA_03677	0.25	-1.3
3,836,948	-		CCNA_03677	0.29	-0.1
3,836,948	-		CCNA_03677	0.29	+0.5
3,837,038	-		CCNA_03677	0.36	-1.5
3,837,040	+		CCNA_03677	0.37	+0.2
3,837,084	+		CCNA_03677	0.40	+0.8
3,837,122	-		CCNA_03677	0.43	-2.0
3,837,122	-		CCNA_03677	0.43	-0.2