Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01888

Experiment: PYE with Sisomicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Sisomicin 0.004 mg/ml
2,027,572	+		CCNA_01886	0.74	-1.4
2,027,575	-		CCNA_01886	0.74	-0.8
2,027,625	+		CCNA_01886	0.76	-0.2
2,027,632	+		CCNA_01886	0.76	+1.0
2,027,706	+		CCNA_01886	0.79	+0.4
2,027,769	+		CCNA_01886	0.81	-2.6
2,027,769	+		CCNA_01886	0.81	-2.0
2,027,775	+		CCNA_01886	0.81	-0.6
2,027,775	+		CCNA_01886	0.81	-0.5
2,027,783	-		CCNA_01886	0.81	-0.9
2,027,788	+		CCNA_01886	0.81	-1.5
2,027,788	+		CCNA_01886	0.81	+2.0
2,027,798	-		CCNA_01886	0.82	-0.0
2,027,803	+		CCNA_01886	0.82	+0.5
2,027,803	+		CCNA_01886	0.82	+0.8
2,027,803	+		CCNA_01886	0.82	+0.5
2,027,804	+		CCNA_01886	0.82	-1.6
2,027,812	-		CCNA_01886	0.82	+1.0
2,027,812	-		CCNA_01886	0.82	-0.6
2,027,827	+		CCNA_01886	0.83	-1.6
2,027,842	-		CCNA_01886	0.83	-1.0
2,027,969	-		CCNA_01886	0.88	-0.4
2,027,982	+		CCNA_01886	0.88	+1.0
2,027,983	+		CCNA_01886	0.88	+0.4
2,027,985	-		CCNA_01886	0.88	+1.0
2,028,004	+		CCNA_01886	0.89	+0.0
2,028,027	-		CCNA_01886	0.90	-0.9
2,028,027	-		CCNA_01886	0.90	+0.4
2,028,048	+				+0.5
2,028,066	+				+0.4
2,028,066	+				-1.2
2,028,071	+				-1.0
2,028,087	+				+1.0
2,028,087	+				+0.4
2,028,095	-				-0.0
2,028,095	-				-0.6
2,028,099	+				-1.0
2,028,128	-				+1.0
2,028,135	+				-0.4
2,028,135	+				+1.0
2,028,135	+				-0.5
2,028,141	+				-1.2
2,028,141	+				+0.4
2,028,186	+				-0.4
2,028,229	+				-1.0
2,028,237	-				+0.4
2,028,237	-				-0.6
2,028,237	-				+1.0
2,028,237	-				-0.6
2,028,237	-				-0.9
2,028,253	+				-1.0
2,028,256	-				-0.4
2,028,258	+				+0.4
2,028,261	-				-1.7
2,028,278	-				+1.0
2,028,279	+				+1.0
2,028,279	+				-2.1
2,028,279	+				-2.4
2,028,287	-				+2.0
2,028,320	+				-1.2
2,028,350	-				+0.2
2,028,385	+				-1.5
2,028,385	+				+1.4
2,028,385	+				+1.0
2,028,385	+				-0.0
2,028,385	+				-0.9
2,028,393	-				-0.6
2,028,393	-				-0.4
2,028,393	-				+0.6
2,028,406	+				-1.6
2,028,409	-				+1.0
2,028,444	+				+2.0
2,028,453	-				-1.2
2,028,539	+				-1.6
2,028,539	+				-0.0
2,028,539	+				-1.9
2,028,547	-				+2.0
2,028,608	-		CCNA_01888	0.14	-2.6
2,028,620	+		CCNA_01888	0.16	-1.0
2,028,630	+		CCNA_01888	0.17	-1.5
2,028,630	+		CCNA_01888	0.17	+0.6
2,028,638	-		CCNA_01888	0.18	+2.0
2,028,646	+		CCNA_01888	0.19	-0.6
2,028,704	+		CCNA_01888	0.27	-0.6
2,028,709	+		CCNA_01888	0.28	-2.5
2,028,728	+		CCNA_01888	0.30	-0.0
2,028,759	-		CCNA_01888	0.34	+1.1
2,028,776	+		CCNA_01888	0.36	+1.0
2,028,798	-		CCNA_01888	0.39	-2.0
2,028,824	+		CCNA_01888	0.42	-0.4
2,028,838	-		CCNA_01888	0.44	+0.4
2,028,847	+		CCNA_01888	0.45	-1.9
2,028,855	-		CCNA_01888	0.46	-1.5
2,028,869	+		CCNA_01888	0.48	-1.0
2,028,880	+		CCNA_01888	0.50	-1.9
2,028,888	-		CCNA_01888	0.51	+2.0
2,028,922	-		CCNA_01888	0.55	-0.6
2,028,925	+		CCNA_01888	0.55	-1.4
2,028,925	+		CCNA_01888	0.55	-1.9
2,028,933	-		CCNA_01888	0.56	-1.9
2,028,935	+		CCNA_01888	0.57	-0.4
2,028,935	+		CCNA_01888	0.57	-1.7
2,028,964	-		CCNA_01888	0.60	-1.0
2,028,971	-		CCNA_01888	0.61	+1.0
2,029,032	-		CCNA_01888	0.69	-1.6
2,029,057	+		CCNA_01888	0.72	-0.6
2,029,057	+		CCNA_01888	0.72	-0.4
2,029,058	+		CCNA_01888	0.73	-0.9
2,029,065	-		CCNA_01888	0.74	-0.0
2,029,106	+		CCNA_01888	0.79	-1.3
2,029,206	+				+0.1
2,029,213	-				+1.0
2,029,246	-				+1.0
2,029,266	-				-1.2
2,029,271	-				-1.4
2,029,317	-				-0.6
2,029,317	-				+1.0
2,029,324	+				+1.0
2,029,324	+				+1.7
2,029,324	+				-1.5
2,029,332	-				-0.1
2,029,332	-				-1.2
2,029,334	+				+1.0
2,029,388	-				-0.3
2,029,468	-		CCNA_01889	0.12	-2.0
2,029,627	-		CCNA_01889	0.21	-0.2
2,029,676	+		CCNA_01889	0.24	-0.9
2,029,729	-		CCNA_01889	0.28	-1.2
2,029,736	+		CCNA_01889	0.28	-0.0
2,029,736	+		CCNA_01889	0.28	-1.4
2,029,742	-		CCNA_01889	0.28	-0.0
2,029,744	-		CCNA_01889	0.29	+1.0
2,029,824	+		CCNA_01889	0.33	-1.9
2,029,832	-		CCNA_01889	0.34	-0.2
2,029,854	-		CCNA_01889	0.35	-0.5
2,029,911	+		CCNA_01889	0.39	-0.9
2,029,919	-		CCNA_01889	0.39	-0.9
2,029,919	-		CCNA_01889	0.39	+1.0
2,029,980	-		CCNA_01889	0.43	-0.6
2,030,002	+		CCNA_01889	0.44	+0.4
2,030,080	-		CCNA_01889	0.49	+1.0
2,030,080	-		CCNA_01889	0.49	-0.4
2,030,099	+		CCNA_01889	0.50	+0.4
2,030,107	-		CCNA_01889	0.51	-1.0
2,030,115	-		CCNA_01889	0.51	-0.8
2,030,127	-		CCNA_01889	0.52	-0.6
2,030,127	-		CCNA_01889	0.52	-0.0
2,030,168	+		CCNA_01889	0.54	-1.8
2,030,168	+		CCNA_01889	0.54	-0.6
2,030,176	-		CCNA_01889	0.55	+1.0
2,030,176	-		CCNA_01889	0.55	-1.6
2,030,204	-		CCNA_01889	0.57	-0.8
2,030,234	-		CCNA_01889	0.58	-1.2
2,030,234	-		CCNA_01889	0.58	+1.0