Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00070

Experiment: PYE with Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00069 and CCNA_00070 are separated by 72 nucleotidesCCNA_00070 and CCNA_00071 are separated by 4 nucleotidesCCNA_00071 and CCNA_00072 are separated by 43 nucleotides CCNA_00069: CCNA_00069 - O-sialoglycoprotein endopeptidase, at 70,801 to 71,904 _00069 CCNA_00070: CCNA_00070 - porphobilinogen deaminase, at 71,977 to 72,945 _00070 CCNA_00071: CCNA_00071 - uroporphyrinogen-III synthase, at 72,950 to 73,636 _00071 CCNA_00072: CCNA_00072 - hypothetical protein, at 73,680 to 74,576 _00072 Position (kb) 71 72 73Strain fitness (log2 ratio) -1 0 1 2 3 4at 71.967 kb on + strandat 71.975 kb on - strandat 72.967 kb on + strandat 72.967 kb on + strandat 72.967 kb on + strandat 73.615 kb on + strandat 73.623 kb on - strandat 73.632 kb on - strandat 73.650 kb on - strandat 73.650 kb on - strandat 73.667 kb on - strandat 73.723 kb on + strandat 73.731 kb on + strandat 73.739 kb on - strandat 73.776 kb on + strand, within CCNA_00072at 73.786 kb on + strand, within CCNA_00072at 73.800 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.831 kb on - strand, within CCNA_00072at 73.890 kb on - strand, within CCNA_00072

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Sisomicin 0.004 mg/ml
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71,967 + -1.0
71,975 - -0.7
72,967 + +1.7
72,967 + -0.1
72,967 + -1.7
73,615 + -0.0
73,623 - -1.0
73,632 - -0.6
73,650 - -0.2
73,650 - +0.0
73,667 - +1.1
73,723 + +1.8
73,731 + +0.8
73,739 - +1.0
73,776 + CCNA_00072 0.11 +2.1
73,786 + CCNA_00072 0.12 +1.5
73,800 + CCNA_00072 0.13 +1.7
73,822 + CCNA_00072 0.16 +1.7
73,830 - CCNA_00072 0.17 +1.0
73,830 - CCNA_00072 0.17 +1.8
73,830 - CCNA_00072 0.17 +0.7
73,830 - CCNA_00072 0.17 +4.2
73,831 - CCNA_00072 0.17 -0.7
73,890 - CCNA_00072 0.23 +0.8

Or see this region's nucleotide sequence