Experiment: Methyl-B-D-galactopyranoside 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01930 and CA265_RS01935 are separated by 438 nucleotides CA265_RS01935 and CA265_RS01940 are separated by 25 nucleotides
CA265_RS01930: CA265_RS01930 - hypothetical protein, at 486,739 to 488,310
_RS01930
CA265_RS01935: CA265_RS01935 - hypothetical protein, at 488,749 to 491,874
_RS01935
CA265_RS01940: CA265_RS01940 - hypothetical protein, at 491,900 to 493,762
_RS01940
Position (kb) 488
489
490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 487.761 kb on + strand, within CA265_RS01930 at 487.808 kb on - strand, within CA265_RS01930 at 487.846 kb on + strand, within CA265_RS01930 at 487.860 kb on - strand, within CA265_RS01930 at 487.860 kb on - strand, within CA265_RS01930 at 487.860 kb on - strand, within CA265_RS01930 at 487.909 kb on - strand, within CA265_RS01930 at 487.915 kb on - strand, within CA265_RS01930 at 487.931 kb on - strand, within CA265_RS01930 at 487.958 kb on + strand, within CA265_RS01930 at 487.959 kb on - strand, within CA265_RS01930 at 487.966 kb on - strand, within CA265_RS01930 at 487.971 kb on - strand, within CA265_RS01930 at 488.004 kb on + strand, within CA265_RS01930 at 488.031 kb on + strand, within CA265_RS01930 at 488.077 kb on - strand, within CA265_RS01930 at 488.080 kb on + strand, within CA265_RS01930 at 488.158 kb on + strand at 488.159 kb on - strand at 488.159 kb on - strand at 488.224 kb on - strand at 488.296 kb on - strand at 488.496 kb on - strand at 488.549 kb on + strand at 488.549 kb on + strand at 488.613 kb on + strand at 488.613 kb on + strand at 488.613 kb on + strand at 488.626 kb on + strand at 488.646 kb on + strand at 488.646 kb on + strand at 488.647 kb on - strand at 488.662 kb on - strand at 488.666 kb on + strand at 488.670 kb on - strand at 488.759 kb on + strand at 488.812 kb on + strand at 488.852 kb on + strand at 488.852 kb on + strand at 488.853 kb on - strand at 488.976 kb on - strand at 488.996 kb on - strand at 489.029 kb on + strand at 489.133 kb on - strand, within CA265_RS01935 at 489.166 kb on - strand, within CA265_RS01935 at 489.178 kb on - strand, within CA265_RS01935 at 489.192 kb on + strand, within CA265_RS01935 at 489.206 kb on + strand, within CA265_RS01935 at 489.206 kb on + strand, within CA265_RS01935 at 489.207 kb on - strand, within CA265_RS01935 at 489.207 kb on - strand, within CA265_RS01935 at 489.208 kb on + strand, within CA265_RS01935 at 489.209 kb on - strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.300 kb on - strand, within CA265_RS01935 at 489.403 kb on + strand, within CA265_RS01935 at 489.591 kb on + strand, within CA265_RS01935 at 489.591 kb on + strand, within CA265_RS01935 at 489.619 kb on + strand, within CA265_RS01935 at 489.683 kb on - strand, within CA265_RS01935 at 489.702 kb on + strand, within CA265_RS01935 at 489.703 kb on - strand, within CA265_RS01935 at 489.703 kb on - strand, within CA265_RS01935 at 489.703 kb on - strand, within CA265_RS01935 at 489.714 kb on - strand, within CA265_RS01935 at 489.764 kb on - strand, within CA265_RS01935 at 489.825 kb on + strand, within CA265_RS01935 at 489.882 kb on + strand, within CA265_RS01935 at 489.885 kb on + strand, within CA265_RS01935 at 489.921 kb on + strand, within CA265_RS01935 at 489.921 kb on + strand, within CA265_RS01935 at 489.952 kb on + strand, within CA265_RS01935 at 489.952 kb on + strand, within CA265_RS01935 at 489.953 kb on - strand, within CA265_RS01935 at 489.955 kb on - strand, within CA265_RS01935 at 489.955 kb on - strand, within CA265_RS01935 at 489.988 kb on + strand, within CA265_RS01935 at 489.989 kb on - strand, within CA265_RS01935 at 490.045 kb on - strand, within CA265_RS01935 at 490.083 kb on - strand, within CA265_RS01935 at 490.087 kb on + strand, within CA265_RS01935 at 490.112 kb on + strand, within CA265_RS01935 at 490.120 kb on - strand, within CA265_RS01935 at 490.129 kb on + strand, within CA265_RS01935 at 490.132 kb on - strand, within CA265_RS01935 at 490.134 kb on - strand, within CA265_RS01935 at 490.134 kb on - strand, within CA265_RS01935 at 490.183 kb on + strand, within CA265_RS01935 at 490.184 kb on - strand, within CA265_RS01935 at 490.187 kb on - strand, within CA265_RS01935 at 490.223 kb on + strand, within CA265_RS01935 at 490.224 kb on - strand, within CA265_RS01935 at 490.227 kb on + strand, within CA265_RS01935 at 490.266 kb on + strand, within CA265_RS01935 at 490.316 kb on + strand, within CA265_RS01935 at 490.366 kb on + strand, within CA265_RS01935 at 490.367 kb on - strand, within CA265_RS01935 at 490.426 kb on + strand, within CA265_RS01935 at 490.507 kb on + strand, within CA265_RS01935 at 490.508 kb on - strand, within CA265_RS01935 at 490.508 kb on - strand, within CA265_RS01935 at 490.508 kb on - strand, within CA265_RS01935 at 490.521 kb on - strand, within CA265_RS01935 at 490.572 kb on + strand, within CA265_RS01935 at 490.572 kb on + strand, within CA265_RS01935 at 490.572 kb on + strand, within CA265_RS01935 at 490.576 kb on + strand, within CA265_RS01935 at 490.576 kb on + strand, within CA265_RS01935 at 490.577 kb on - strand, within CA265_RS01935 at 490.577 kb on - strand, within CA265_RS01935 at 490.578 kb on + strand, within CA265_RS01935 at 490.693 kb on - strand, within CA265_RS01935 at 490.774 kb on + strand, within CA265_RS01935 at 490.775 kb on - strand, within CA265_RS01935 at 490.831 kb on - strand, within CA265_RS01935 at 490.831 kb on - strand, within CA265_RS01935 at 490.853 kb on + strand, within CA265_RS01935 at 490.873 kb on - strand, within CA265_RS01935 at 490.902 kb on - strand, within CA265_RS01935 at 490.923 kb on - strand, within CA265_RS01935 at 490.966 kb on + strand, within CA265_RS01935 at 490.967 kb on - strand, within CA265_RS01935 at 490.967 kb on - strand, within CA265_RS01935 at 491.053 kb on - strand, within CA265_RS01935 at 491.078 kb on - strand, within CA265_RS01935 at 491.111 kb on + strand, within CA265_RS01935 at 491.111 kb on + strand, within CA265_RS01935 at 491.111 kb on + strand, within CA265_RS01935 at 491.112 kb on - strand, within CA265_RS01935 at 491.112 kb on - strand, within CA265_RS01935 at 491.112 kb on - strand, within CA265_RS01935 at 491.129 kb on - strand, within CA265_RS01935 at 491.129 kb on - strand, within CA265_RS01935 at 491.144 kb on - strand, within CA265_RS01935 at 491.170 kb on + strand, within CA265_RS01935 at 491.184 kb on + strand, within CA265_RS01935 at 491.187 kb on - strand, within CA265_RS01935 at 491.212 kb on - strand, within CA265_RS01935 at 491.212 kb on - strand, within CA265_RS01935 at 491.293 kb on - strand, within CA265_RS01935 at 491.332 kb on + strand, within CA265_RS01935 at 491.344 kb on - strand, within CA265_RS01935 at 491.385 kb on - strand, within CA265_RS01935 at 491.385 kb on - strand, within CA265_RS01935 at 491.397 kb on + strand, within CA265_RS01935 at 491.397 kb on + strand, within CA265_RS01935 at 491.596 kb on + strand at 491.597 kb on - strand at 491.616 kb on - strand at 491.626 kb on - strand at 491.698 kb on - strand at 491.715 kb on - strand at 491.747 kb on - strand at 491.858 kb on + strand at 491.880 kb on - strand at 491.886 kb on - strand at 491.911 kb on - strand at 491.935 kb on + strand at 491.947 kb on + strand at 491.948 kb on - strand at 492.003 kb on + strand at 492.019 kb on - strand at 492.060 kb on + strand at 492.171 kb on + strand, within CA265_RS01940 at 492.199 kb on + strand, within CA265_RS01940 at 492.321 kb on - strand, within CA265_RS01940 at 492.321 kb on - strand, within CA265_RS01940 at 492.364 kb on - strand, within CA265_RS01940 at 492.387 kb on + strand, within CA265_RS01940 at 492.388 kb on - strand, within CA265_RS01940 at 492.403 kb on - strand, within CA265_RS01940 at 492.439 kb on + strand, within CA265_RS01940 at 492.441 kb on + strand, within CA265_RS01940 at 492.509 kb on - strand, within CA265_RS01940 at 492.555 kb on - strand, within CA265_RS01940 at 492.555 kb on - strand, within CA265_RS01940 at 492.568 kb on - strand, within CA265_RS01940 at 492.611 kb on - strand, within CA265_RS01940 at 492.630 kb on + strand at 492.706 kb on + strand, within CA265_RS01940 at 492.707 kb on - strand, within CA265_RS01940 at 492.709 kb on + strand, within CA265_RS01940 at 492.710 kb on - strand, within CA265_RS01940 at 492.725 kb on + strand, within CA265_RS01940 at 492.740 kb on + strand, within CA265_RS01940 at 492.741 kb on - strand, within CA265_RS01940 at 492.787 kb on + strand, within CA265_RS01940 at 492.811 kb on - strand, within CA265_RS01940 at 492.874 kb on - strand, within CA265_RS01940
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C) remove 487,761 + CA265_RS01930 0.65 +0.3 487,808 - CA265_RS01930 0.68 +0.9 487,846 + CA265_RS01930 0.70 -1.8 487,860 - CA265_RS01930 0.71 -0.7 487,860 - CA265_RS01930 0.71 -3.5 487,860 - CA265_RS01930 0.71 -0.1 487,909 - CA265_RS01930 0.74 -0.0 487,915 - CA265_RS01930 0.75 -0.8 487,931 - CA265_RS01930 0.76 -0.2 487,958 + CA265_RS01930 0.78 -1.4 487,959 - CA265_RS01930 0.78 -0.3 487,966 - CA265_RS01930 0.78 +0.4 487,971 - CA265_RS01930 0.78 -1.1 488,004 + CA265_RS01930 0.80 -0.4 488,031 + CA265_RS01930 0.82 -1.1 488,077 - CA265_RS01930 0.85 -2.0 488,080 + CA265_RS01930 0.85 -0.4 488,158 + +1.4 488,159 - -3.4 488,159 - -0.9 488,224 - +1.2 488,296 - -0.9 488,496 - +1.0 488,549 + +0.7 488,549 + -0.7 488,613 + +0.1 488,613 + +2.3 488,613 + +1.2 488,626 + +0.9 488,646 + +1.0 488,646 + -0.2 488,647 - +1.5 488,662 - -0.0 488,666 + +0.3 488,670 - -1.3 488,759 + +1.1 488,812 + -0.0 488,852 + -0.3 488,852 + -0.8 488,853 - +0.9 488,976 - -0.5 488,996 - +1.4 489,029 + -2.1 489,133 - CA265_RS01935 0.12 +0.1 489,166 - CA265_RS01935 0.13 -0.7 489,178 - CA265_RS01935 0.14 -0.0 489,192 + CA265_RS01935 0.14 -0.2 489,206 + CA265_RS01935 0.15 +0.9 489,206 + CA265_RS01935 0.15 +2.9 489,207 - CA265_RS01935 0.15 -0.3 489,207 - CA265_RS01935 0.15 -1.1 489,208 + CA265_RS01935 0.15 -0.3 489,209 - CA265_RS01935 0.15 +0.8 489,299 + CA265_RS01935 0.18 +1.0 489,299 + CA265_RS01935 0.18 -0.5 489,299 + CA265_RS01935 0.18 -2.5 489,299 + CA265_RS01935 0.18 -0.7 489,300 - CA265_RS01935 0.18 -0.8 489,403 + CA265_RS01935 0.21 +1.2 489,591 + CA265_RS01935 0.27 +0.5 489,591 + CA265_RS01935 0.27 -0.2 489,619 + CA265_RS01935 0.28 +0.4 489,683 - CA265_RS01935 0.30 -2.4 489,702 + CA265_RS01935 0.30 -0.3 489,703 - CA265_RS01935 0.31 -0.7 489,703 - CA265_RS01935 0.31 +0.3 489,703 - CA265_RS01935 0.31 -0.8 489,714 - CA265_RS01935 0.31 +0.5 489,764 - CA265_RS01935 0.32 +1.1 489,825 + CA265_RS01935 0.34 -0.1 489,882 + CA265_RS01935 0.36 +0.5 489,885 + CA265_RS01935 0.36 -1.0 489,921 + CA265_RS01935 0.37 +1.1 489,921 + CA265_RS01935 0.37 +0.5 489,952 + CA265_RS01935 0.38 +0.2 489,952 + CA265_RS01935 0.38 -0.3 489,953 - CA265_RS01935 0.39 -0.4 489,955 - CA265_RS01935 0.39 -1.2 489,955 - CA265_RS01935 0.39 +0.2 489,988 + CA265_RS01935 0.40 -0.5 489,989 - CA265_RS01935 0.40 -0.2 490,045 - CA265_RS01935 0.41 -1.3 490,083 - CA265_RS01935 0.43 -1.1 490,087 + CA265_RS01935 0.43 +2.6 490,112 + CA265_RS01935 0.44 +1.1 490,120 - CA265_RS01935 0.44 -0.5 490,129 + CA265_RS01935 0.44 -0.3 490,132 - CA265_RS01935 0.44 -1.4 490,134 - CA265_RS01935 0.44 +0.2 490,134 - CA265_RS01935 0.44 -0.2 490,183 + CA265_RS01935 0.46 -0.8 490,184 - CA265_RS01935 0.46 +1.1 490,187 - CA265_RS01935 0.46 -0.8 490,223 + CA265_RS01935 0.47 +0.3 490,224 - CA265_RS01935 0.47 +0.1 490,227 + CA265_RS01935 0.47 -0.2 490,266 + CA265_RS01935 0.49 -1.5 490,316 + CA265_RS01935 0.50 -2.2 490,366 + CA265_RS01935 0.52 -0.1 490,367 - CA265_RS01935 0.52 +0.9 490,426 + CA265_RS01935 0.54 -0.3 490,507 + CA265_RS01935 0.56 -0.5 490,508 - CA265_RS01935 0.56 +0.6 490,508 - CA265_RS01935 0.56 -0.1 490,508 - CA265_RS01935 0.56 -0.8 490,521 - CA265_RS01935 0.57 -0.9 490,572 + CA265_RS01935 0.58 -0.7 490,572 + CA265_RS01935 0.58 -0.1 490,572 + CA265_RS01935 0.58 -2.1 490,576 + CA265_RS01935 0.58 +0.0 490,576 + CA265_RS01935 0.58 -0.4 490,577 - CA265_RS01935 0.58 +0.1 490,577 - CA265_RS01935 0.58 -2.0 490,578 + CA265_RS01935 0.59 -0.5 490,693 - CA265_RS01935 0.62 +0.8 490,774 + CA265_RS01935 0.65 +0.3 490,775 - CA265_RS01935 0.65 +1.0 490,831 - CA265_RS01935 0.67 -0.1 490,831 - CA265_RS01935 0.67 +0.1 490,853 + CA265_RS01935 0.67 +1.3 490,873 - CA265_RS01935 0.68 +1.8 490,902 - CA265_RS01935 0.69 -0.3 490,923 - CA265_RS01935 0.70 -1.1 490,966 + CA265_RS01935 0.71 +0.4 490,967 - CA265_RS01935 0.71 -1.6 490,967 - CA265_RS01935 0.71 +0.4 491,053 - CA265_RS01935 0.74 -0.1 491,078 - CA265_RS01935 0.75 -0.5 491,111 + CA265_RS01935 0.76 -0.4 491,111 + CA265_RS01935 0.76 -0.7 491,111 + CA265_RS01935 0.76 +0.9 491,112 - CA265_RS01935 0.76 -0.5 491,112 - CA265_RS01935 0.76 -0.4 491,112 - CA265_RS01935 0.76 -0.6 491,129 - CA265_RS01935 0.76 -0.7 491,129 - CA265_RS01935 0.76 -0.2 491,144 - CA265_RS01935 0.77 -0.3 491,170 + CA265_RS01935 0.77 -0.8 491,184 + CA265_RS01935 0.78 +0.5 491,187 - CA265_RS01935 0.78 -0.4 491,212 - CA265_RS01935 0.79 +0.7 491,212 - CA265_RS01935 0.79 -0.7 491,293 - CA265_RS01935 0.81 -0.9 491,332 + CA265_RS01935 0.83 -0.6 491,344 - CA265_RS01935 0.83 -0.3 491,385 - CA265_RS01935 0.84 -0.8 491,385 - CA265_RS01935 0.84 +0.3 491,397 + CA265_RS01935 0.85 +0.3 491,397 + CA265_RS01935 0.85 +0.7 491,596 + +1.8 491,597 - +1.4 491,616 - -0.0 491,626 - -0.2 491,698 - +0.6 491,715 - +0.4 491,747 - +0.2 491,858 + +1.5 491,880 - +0.3 491,886 - +0.4 491,911 - +0.3 491,935 + -0.7 491,947 + +0.2 491,948 - +2.2 492,003 + -1.0 492,019 - -0.4 492,060 + -1.5 492,171 + CA265_RS01940 0.15 -0.9 492,199 + CA265_RS01940 0.16 -0.5 492,321 - CA265_RS01940 0.23 +0.5 492,321 - CA265_RS01940 0.23 -0.2 492,364 - CA265_RS01940 0.25 +0.2 492,387 + CA265_RS01940 0.26 -0.4 492,388 - CA265_RS01940 0.26 +1.6 492,403 - CA265_RS01940 0.27 +1.7 492,439 + CA265_RS01940 0.29 +0.0 492,441 + CA265_RS01940 0.29 +0.1 492,509 - CA265_RS01940 0.33 +0.1 492,555 - CA265_RS01940 0.35 +0.1 492,555 - CA265_RS01940 0.35 -1.4 492,568 - CA265_RS01940 0.36 +0.4 492,611 - CA265_RS01940 0.38 +0.1 492,630 + -0.7 492,706 + CA265_RS01940 0.43 +0.1 492,707 - CA265_RS01940 0.43 -0.3 492,709 + CA265_RS01940 0.43 -2.5 492,710 - CA265_RS01940 0.43 -0.2 492,725 + CA265_RS01940 0.44 -0.4 492,740 + CA265_RS01940 0.45 +0.3 492,741 - CA265_RS01940 0.45 -0.6 492,787 + CA265_RS01940 0.48 +1.9 492,811 - CA265_RS01940 0.49 +0.2 492,874 - CA265_RS01940 0.52 -0.7
Or see this region's nucleotide sequence