Experiment: Methyl-B-D-galactopyranoside 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00220 and CA265_RS00225 are separated by 84 nucleotides CA265_RS00225 and CA265_RS00230 are separated by 160 nucleotides CA265_RS00230 and CA265_RS00235 are separated by 150 nucleotides CA265_RS00235 and CA265_RS00240 are separated by 5 nucleotides
CA265_RS00220: CA265_RS00220 - potassium-transporting ATPase subunit B, at 53,565 to 55,592
_RS00220
CA265_RS00225: CA265_RS00225 - potassium-transporting ATPase subunit C, at 55,677 to 56,237
_RS00225
CA265_RS00230: CA265_RS00230 - hypothetical protein, at 56,398 to 57,468
_RS00230
CA265_RS00235: CA265_RS00235 - hypothetical protein, at 57,619 to 57,867
_RS00235
CA265_RS00240: CA265_RS00240 - histidine kinase, at 57,873 to 59,003
_RS00240
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 55.430 kb on + strand at 55.470 kb on + strand at 55.495 kb on + strand at 55.516 kb on + strand at 55.516 kb on + strand at 55.516 kb on + strand at 55.517 kb on - strand at 55.517 kb on - strand at 55.517 kb on - strand at 55.517 kb on - strand at 55.517 kb on - strand at 55.517 kb on - strand at 55.519 kb on - strand at 55.519 kb on - strand at 55.519 kb on - strand at 55.547 kb on + strand at 55.547 kb on + strand at 55.549 kb on + strand at 55.718 kb on - strand at 55.732 kb on + strand at 55.738 kb on + strand, within CA265_RS00225 at 55.739 kb on - strand, within CA265_RS00225 at 55.739 kb on - strand, within CA265_RS00225 at 55.739 kb on - strand, within CA265_RS00225 at 55.741 kb on + strand, within CA265_RS00225 at 55.742 kb on - strand, within CA265_RS00225 at 55.742 kb on - strand, within CA265_RS00225 at 55.769 kb on + strand, within CA265_RS00225 at 55.867 kb on - strand, within CA265_RS00225 at 55.896 kb on + strand, within CA265_RS00225 at 55.896 kb on + strand, within CA265_RS00225 at 55.897 kb on - strand, within CA265_RS00225 at 55.952 kb on - strand, within CA265_RS00225 at 55.990 kb on - strand, within CA265_RS00225 at 56.015 kb on + strand, within CA265_RS00225 at 56.016 kb on - strand, within CA265_RS00225 at 56.064 kb on - strand, within CA265_RS00225 at 56.144 kb on - strand, within CA265_RS00225 at 56.197 kb on + strand at 56.235 kb on + strand at 56.300 kb on - strand at 56.414 kb on + strand at 56.598 kb on + strand, within CA265_RS00230 at 56.609 kb on - strand, within CA265_RS00230 at 56.691 kb on - strand, within CA265_RS00230 at 56.829 kb on + strand, within CA265_RS00230 at 56.851 kb on + strand, within CA265_RS00230 at 56.854 kb on + strand, within CA265_RS00230 at 56.878 kb on + strand, within CA265_RS00230 at 56.879 kb on - strand, within CA265_RS00230 at 56.887 kb on - strand, within CA265_RS00230 at 56.917 kb on + strand, within CA265_RS00230 at 56.918 kb on - strand, within CA265_RS00230 at 56.962 kb on - strand, within CA265_RS00230 at 57.003 kb on + strand, within CA265_RS00230 at 57.003 kb on + strand, within CA265_RS00230 at 57.085 kb on + strand, within CA265_RS00230 at 57.085 kb on + strand, within CA265_RS00230 at 57.091 kb on - strand, within CA265_RS00230 at 57.171 kb on + strand, within CA265_RS00230 at 57.210 kb on + strand, within CA265_RS00230 at 57.253 kb on + strand, within CA265_RS00230 at 57.254 kb on - strand, within CA265_RS00230 at 57.316 kb on + strand, within CA265_RS00230 at 57.334 kb on + strand, within CA265_RS00230 at 57.601 kb on - strand at 57.619 kb on + strand at 57.633 kb on - strand at 57.663 kb on - strand, within CA265_RS00235 at 57.663 kb on - strand, within CA265_RS00235 at 57.787 kb on - strand, within CA265_RS00235 at 57.831 kb on - strand, within CA265_RS00235 at 57.848 kb on + strand at 57.993 kb on - strand, within CA265_RS00240 at 58.126 kb on - strand, within CA265_RS00240 at 58.126 kb on - strand, within CA265_RS00240 at 58.146 kb on + strand, within CA265_RS00240 at 58.190 kb on + strand, within CA265_RS00240 at 58.212 kb on - strand, within CA265_RS00240 at 58.367 kb on + strand, within CA265_RS00240 at 58.381 kb on + strand, within CA265_RS00240 at 58.390 kb on + strand, within CA265_RS00240 at 58.390 kb on + strand, within CA265_RS00240
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C) remove 55,430 + +2.7 55,470 + +2.0 55,495 + +1.6 55,516 + +1.0 55,516 + +0.0 55,516 + -0.3 55,517 - +1.2 55,517 - -0.1 55,517 - -1.1 55,517 - -1.0 55,517 - -0.6 55,517 - -0.4 55,519 - +0.1 55,519 - +0.3 55,519 - -1.8 55,547 + +1.1 55,547 + -2.0 55,549 + -0.4 55,718 - +0.3 55,732 + +1.3 55,738 + CA265_RS00225 0.11 -0.7 55,739 - CA265_RS00225 0.11 -1.0 55,739 - CA265_RS00225 0.11 -0.2 55,739 - CA265_RS00225 0.11 +0.6 55,741 + CA265_RS00225 0.11 +0.3 55,742 - CA265_RS00225 0.12 -0.6 55,742 - CA265_RS00225 0.12 +0.7 55,769 + CA265_RS00225 0.16 -0.0 55,867 - CA265_RS00225 0.34 -0.6 55,896 + CA265_RS00225 0.39 -0.2 55,896 + CA265_RS00225 0.39 +0.2 55,897 - CA265_RS00225 0.39 -0.9 55,952 - CA265_RS00225 0.49 -1.5 55,990 - CA265_RS00225 0.56 -0.0 56,015 + CA265_RS00225 0.60 +0.2 56,016 - CA265_RS00225 0.60 -0.6 56,064 - CA265_RS00225 0.69 +0.4 56,144 - CA265_RS00225 0.83 +1.6 56,197 + +0.3 56,235 + -1.2 56,300 - -0.4 56,414 + +0.1 56,598 + CA265_RS00230 0.19 -0.4 56,609 - CA265_RS00230 0.20 +1.2 56,691 - CA265_RS00230 0.27 -1.2 56,829 + CA265_RS00230 0.40 -1.5 56,851 + CA265_RS00230 0.42 -0.1 56,854 + CA265_RS00230 0.43 -1.6 56,878 + CA265_RS00230 0.45 -1.6 56,879 - CA265_RS00230 0.45 -0.6 56,887 - CA265_RS00230 0.46 -0.5 56,917 + CA265_RS00230 0.48 -0.0 56,918 - CA265_RS00230 0.49 -0.0 56,962 - CA265_RS00230 0.53 +0.0 57,003 + CA265_RS00230 0.56 +0.4 57,003 + CA265_RS00230 0.56 -0.1 57,085 + CA265_RS00230 0.64 -1.7 57,085 + CA265_RS00230 0.64 +2.0 57,091 - CA265_RS00230 0.65 -0.2 57,171 + CA265_RS00230 0.72 -1.3 57,210 + CA265_RS00230 0.76 -0.3 57,253 + CA265_RS00230 0.80 -2.0 57,254 - CA265_RS00230 0.80 +0.4 57,316 + CA265_RS00230 0.86 -0.4 57,334 + CA265_RS00230 0.87 -3.9 57,601 - -0.5 57,619 + +2.2 57,633 - +0.6 57,663 - CA265_RS00235 0.18 +0.1 57,663 - CA265_RS00235 0.18 +0.2 57,787 - CA265_RS00235 0.67 -0.2 57,831 - CA265_RS00235 0.85 -0.5 57,848 + -1.1 57,993 - CA265_RS00240 0.11 -3.5 58,126 - CA265_RS00240 0.22 +0.5 58,126 - CA265_RS00240 0.22 +0.2 58,146 + CA265_RS00240 0.24 -0.9 58,190 + CA265_RS00240 0.28 -0.9 58,212 - CA265_RS00240 0.30 +0.0 58,367 + CA265_RS00240 0.44 +1.2 58,381 + CA265_RS00240 0.45 +1.2 58,390 + CA265_RS00240 0.46 -0.0 58,390 + CA265_RS00240 0.46 +0.3
Or see this region's nucleotide sequence