Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32105

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32100 and AZOBR_RS32105 overlap by 4 nucleotidesAZOBR_RS32105 and AZOBR_RS32110 are separated by 11 nucleotides AZOBR_RS32100: AZOBR_RS32100 - cytochrome C, at 572,893 to 573,513 _RS32100 AZOBR_RS32105: AZOBR_RS32105 - nitrate reductase, at 573,510 to 573,992 _RS32105 AZOBR_RS32110: AZOBR_RS32110 - nitrate reductase catalytic subunit, at 574,004 to 576,514 _RS32110 Position (kb) 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 572.530 kb on - strandat 572.586 kb on - strandat 572.656 kb on - strandat 572.661 kb on + strandat 572.662 kb on - strandat 572.820 kb on + strandat 572.820 kb on + strandat 572.820 kb on + strandat 573.005 kb on + strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.006 kb on - strand, within AZOBR_RS32100at 573.317 kb on + strand, within AZOBR_RS32100at 573.620 kb on - strand, within AZOBR_RS32105at 573.761 kb on - strand, within AZOBR_RS32105at 573.761 kb on - strand, within AZOBR_RS32105at 574.392 kb on + strand, within AZOBR_RS32110at 574.393 kb on - strand, within AZOBR_RS32110at 574.393 kb on - strand, within AZOBR_RS32110at 574.393 kb on - strand, within AZOBR_RS32110at 574.435 kb on - strand, within AZOBR_RS32110at 574.464 kb on + strand, within AZOBR_RS32110at 574.465 kb on - strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.545 kb on + strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.546 kb on - strand, within AZOBR_RS32110at 574.555 kb on - strand, within AZOBR_RS32110at 574.597 kb on - strand, within AZOBR_RS32110at 574.623 kb on + strand, within AZOBR_RS32110at 574.623 kb on + strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.624 kb on - strand, within AZOBR_RS32110at 574.657 kb on - strand, within AZOBR_RS32110at 574.707 kb on + strand, within AZOBR_RS32110at 574.707 kb on + strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.708 kb on - strand, within AZOBR_RS32110at 574.963 kb on - strand, within AZOBR_RS32110

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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572,530 - +1.7
572,586 - -0.7
572,656 - -1.3
572,661 + -0.3
572,662 - +2.2
572,820 + +0.2
572,820 + +0.4
572,820 + -1.8
573,005 + AZOBR_RS32100 0.18 -2.2
573,006 - AZOBR_RS32100 0.18 -3.6
573,006 - AZOBR_RS32100 0.18 -2.5
573,006 - AZOBR_RS32100 0.18 -1.9
573,006 - AZOBR_RS32100 0.18 +2.1
573,317 + AZOBR_RS32100 0.68 +1.0
573,620 - AZOBR_RS32105 0.23 -0.1
573,761 - AZOBR_RS32105 0.52 -0.5
573,761 - AZOBR_RS32105 0.52 -1.7
574,392 + AZOBR_RS32110 0.15 -0.3
574,393 - AZOBR_RS32110 0.15 +0.2
574,393 - AZOBR_RS32110 0.15 +0.9
574,393 - AZOBR_RS32110 0.15 +0.7
574,435 - AZOBR_RS32110 0.17 +0.3
574,464 + AZOBR_RS32110 0.18 +0.5
574,465 - AZOBR_RS32110 0.18 -1.7
574,545 + AZOBR_RS32110 0.22 -0.6
574,545 + AZOBR_RS32110 0.22 -0.5
574,545 + AZOBR_RS32110 0.22 -2.7
574,545 + AZOBR_RS32110 0.22 -2.2
574,546 - AZOBR_RS32110 0.22 +0.0
574,546 - AZOBR_RS32110 0.22 -3.4
574,546 - AZOBR_RS32110 0.22 +0.0
574,546 - AZOBR_RS32110 0.22 +0.3
574,555 - AZOBR_RS32110 0.22 +0.4
574,597 - AZOBR_RS32110 0.24 +1.8
574,623 + AZOBR_RS32110 0.25 +0.7
574,623 + AZOBR_RS32110 0.25 +0.4
574,624 - AZOBR_RS32110 0.25 +0.4
574,624 - AZOBR_RS32110 0.25 -3.1
574,624 - AZOBR_RS32110 0.25 -1.7
574,624 - AZOBR_RS32110 0.25 +0.6
574,657 - AZOBR_RS32110 0.26 -3.0
574,707 + AZOBR_RS32110 0.28 -2.7
574,707 + AZOBR_RS32110 0.28 -0.7
574,708 - AZOBR_RS32110 0.28 -2.4
574,708 - AZOBR_RS32110 0.28 +1.3
574,708 - AZOBR_RS32110 0.28 -0.3
574,708 - AZOBR_RS32110 0.28 +0.1
574,963 - AZOBR_RS32110 0.38 +0.1

Or see this region's nucleotide sequence