Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32095 and AZOBR_RS32100 are separated by 506 nucleotides AZOBR_RS32100 and AZOBR_RS32105 overlap by 4 nucleotides AZOBR_RS32105 and AZOBR_RS32110 are separated by 11 nucleotides
AZOBR_RS32095: AZOBR_RS32095 - hypothetical protein, at 571,847 to 572,386
_RS32095
AZOBR_RS32100: AZOBR_RS32100 - cytochrome C, at 572,893 to 573,513
_RS32100
AZOBR_RS32105: AZOBR_RS32105 - nitrate reductase, at 573,510 to 573,992
_RS32105
AZOBR_RS32110: AZOBR_RS32110 - nitrate reductase catalytic subunit, at 574,004 to 576,514
_RS32110
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.043 kb on + strand, within AZOBR_RS32095 at 572.043 kb on + strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.530 kb on - strand at 572.586 kb on - strand at 572.656 kb on - strand at 572.661 kb on + strand at 572.662 kb on - strand at 572.820 kb on + strand at 572.820 kb on + strand at 572.820 kb on + strand at 573.005 kb on + strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.317 kb on + strand, within AZOBR_RS32100 at 573.620 kb on - strand, within AZOBR_RS32105 at 573.761 kb on - strand, within AZOBR_RS32105 at 573.761 kb on - strand, within AZOBR_RS32105 at 574.392 kb on + strand, within AZOBR_RS32110 at 574.393 kb on - strand, within AZOBR_RS32110 at 574.393 kb on - strand, within AZOBR_RS32110 at 574.393 kb on - strand, within AZOBR_RS32110 at 574.435 kb on - strand, within AZOBR_RS32110 at 574.464 kb on + strand, within AZOBR_RS32110 at 574.465 kb on - strand, within AZOBR_RS32110
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 572,043 + AZOBR_RS32095 0.36 -0.4 572,043 + AZOBR_RS32095 0.36 -0.2 572,044 - AZOBR_RS32095 0.36 -0.1 572,044 - AZOBR_RS32095 0.36 -0.4 572,044 - AZOBR_RS32095 0.36 -1.0 572,272 + AZOBR_RS32095 0.79 -0.2 572,272 + AZOBR_RS32095 0.79 -0.3 572,272 + AZOBR_RS32095 0.79 -2.5 572,272 + AZOBR_RS32095 0.79 -0.2 572,273 - AZOBR_RS32095 0.79 +1.1 572,273 - AZOBR_RS32095 0.79 +0.4 572,530 - +1.7 572,586 - -0.7 572,656 - -1.3 572,661 + -0.3 572,662 - +2.2 572,820 + +0.2 572,820 + +0.4 572,820 + -1.8 573,005 + AZOBR_RS32100 0.18 -2.2 573,006 - AZOBR_RS32100 0.18 -3.6 573,006 - AZOBR_RS32100 0.18 -2.5 573,006 - AZOBR_RS32100 0.18 -1.9 573,006 - AZOBR_RS32100 0.18 +2.1 573,317 + AZOBR_RS32100 0.68 +1.0 573,620 - AZOBR_RS32105 0.23 -0.1 573,761 - AZOBR_RS32105 0.52 -0.5 573,761 - AZOBR_RS32105 0.52 -1.7 574,392 + AZOBR_RS32110 0.15 -0.3 574,393 - AZOBR_RS32110 0.15 +0.2 574,393 - AZOBR_RS32110 0.15 +0.9 574,393 - AZOBR_RS32110 0.15 +0.7 574,435 - AZOBR_RS32110 0.17 +0.3 574,464 + AZOBR_RS32110 0.18 +0.5 574,465 - AZOBR_RS32110 0.18 -1.7
Or see this region's nucleotide sequence