Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30150 and AZOBR_RS30155 are separated by 171 nucleotides AZOBR_RS30155 and AZOBR_RS30160 are separated by 501 nucleotides
AZOBR_RS30150: AZOBR_RS30150 - pyruvate formate lyase-activating protein, at 103,122 to 103,889
_RS30150
AZOBR_RS30155: AZOBR_RS30155 - pyruvate kinase, at 104,061 to 105,494
_RS30155
AZOBR_RS30160: AZOBR_RS30160 - chemotaxis protein CheY, at 105,996 to 108,557
_RS30160
Position (kb) 104
105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.358 kb on - strand, within AZOBR_RS30150 at 103.358 kb on - strand, within AZOBR_RS30150 at 103.444 kb on + strand, within AZOBR_RS30150 at 103.579 kb on + strand, within AZOBR_RS30150 at 103.580 kb on - strand, within AZOBR_RS30150 at 103.666 kb on + strand at 103.747 kb on + strand, within AZOBR_RS30150 at 103.747 kb on + strand, within AZOBR_RS30150 at 103.787 kb on - strand, within AZOBR_RS30150 at 103.787 kb on - strand at 103.787 kb on - strand, within AZOBR_RS30150 at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.965 kb on - strand at 103.965 kb on - strand at 103.965 kb on - strand at 104.347 kb on + strand, within AZOBR_RS30155 at 104.348 kb on - strand, within AZOBR_RS30155 at 105.557 kb on + strand at 105.861 kb on + strand at 105.995 kb on + strand at 106.489 kb on - strand, within AZOBR_RS30160 at 106.489 kb on - strand, within AZOBR_RS30160 at 106.489 kb on - strand, within AZOBR_RS30160
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 103,357 + AZOBR_RS30150 0.31 +1.4 103,357 + AZOBR_RS30150 0.31 -1.1 103,357 + AZOBR_RS30150 0.31 +0.8 103,358 - AZOBR_RS30150 0.31 -1.4 103,358 - AZOBR_RS30150 0.31 -0.9 103,444 + AZOBR_RS30150 0.42 -2.6 103,579 + AZOBR_RS30150 0.60 -2.4 103,580 - AZOBR_RS30150 0.60 +0.1 103,666 + +1.1 103,747 + AZOBR_RS30150 0.81 -3.8 103,747 + AZOBR_RS30150 0.81 -0.3 103,787 - AZOBR_RS30150 0.87 +1.6 103,787 - +3.7 103,787 - AZOBR_RS30150 0.87 +0.1 103,964 + -0.5 103,964 + -0.4 103,964 + +1.1 103,964 + -0.1 103,964 + -1.3 103,965 - -0.9 103,965 - -1.9 103,965 - -0.8 104,347 + AZOBR_RS30155 0.20 -2.7 104,348 - AZOBR_RS30155 0.20 -0.7 105,557 + -0.1 105,861 + +0.1 105,995 + +0.0 106,489 - AZOBR_RS30160 0.19 +1.6 106,489 - AZOBR_RS30160 0.19 -0.9 106,489 - AZOBR_RS30160 0.19 +0.3
Or see this region's nucleotide sequence