Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30140 and AZOBR_RS30145 are separated by 149 nucleotides AZOBR_RS30145 and AZOBR_RS30150 are separated by 80 nucleotides
AZOBR_RS30140: AZOBR_RS30140 - multidrug transporter, at 101,150 to 102,022
_RS30140
AZOBR_RS30145: AZOBR_RS30145 - formate transporter, at 102,172 to 103,041
_RS30145
AZOBR_RS30150: AZOBR_RS30150 - pyruvate formate lyase-activating protein, at 103,122 to 103,889
_RS30150
Position (kb) 102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 101.284 kb on - strand, within AZOBR_RS30140 at 101.340 kb on + strand, within AZOBR_RS30140 at 101.460 kb on + strand, within AZOBR_RS30140 at 101.461 kb on - strand, within AZOBR_RS30140 at 101.527 kb on - strand, within AZOBR_RS30140 at 101.638 kb on - strand, within AZOBR_RS30140 at 101.739 kb on + strand, within AZOBR_RS30140 at 101.739 kb on + strand, within AZOBR_RS30140 at 101.950 kb on - strand at 102.148 kb on + strand at 102.216 kb on - strand at 102.380 kb on + strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.573 kb on - strand, within AZOBR_RS30145 at 102.611 kb on + strand, within AZOBR_RS30145 at 102.941 kb on + strand, within AZOBR_RS30145 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.357 kb on + strand, within AZOBR_RS30150 at 103.358 kb on - strand, within AZOBR_RS30150 at 103.358 kb on - strand, within AZOBR_RS30150 at 103.444 kb on + strand, within AZOBR_RS30150 at 103.579 kb on + strand, within AZOBR_RS30150 at 103.580 kb on - strand, within AZOBR_RS30150 at 103.666 kb on + strand at 103.747 kb on + strand, within AZOBR_RS30150 at 103.747 kb on + strand, within AZOBR_RS30150 at 103.787 kb on - strand, within AZOBR_RS30150 at 103.787 kb on - strand at 103.787 kb on - strand, within AZOBR_RS30150 at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.964 kb on + strand at 103.965 kb on - strand at 103.965 kb on - strand at 103.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 101,284 - AZOBR_RS30140 0.15 +0.1 101,340 + AZOBR_RS30140 0.22 -0.1 101,460 + AZOBR_RS30140 0.36 -0.4 101,461 - AZOBR_RS30140 0.36 -0.1 101,527 - AZOBR_RS30140 0.43 -0.2 101,638 - AZOBR_RS30140 0.56 +0.5 101,739 + AZOBR_RS30140 0.67 -0.8 101,739 + AZOBR_RS30140 0.67 -0.1 101,950 - +0.7 102,148 + +1.6 102,216 - -0.2 102,380 + AZOBR_RS30145 0.24 -0.4 102,381 - AZOBR_RS30145 0.24 +0.4 102,381 - AZOBR_RS30145 0.24 -0.2 102,381 - AZOBR_RS30145 0.24 -1.4 102,381 - AZOBR_RS30145 0.24 +0.5 102,572 + AZOBR_RS30145 0.46 -0.0 102,572 + AZOBR_RS30145 0.46 +0.4 102,572 + AZOBR_RS30145 0.46 -1.3 102,572 + AZOBR_RS30145 0.46 -0.8 102,573 - AZOBR_RS30145 0.46 +0.6 102,611 + AZOBR_RS30145 0.50 -1.1 102,941 + AZOBR_RS30145 0.88 +0.4 103,357 + AZOBR_RS30150 0.31 +1.4 103,357 + AZOBR_RS30150 0.31 -1.1 103,357 + AZOBR_RS30150 0.31 +0.8 103,358 - AZOBR_RS30150 0.31 -1.4 103,358 - AZOBR_RS30150 0.31 -0.9 103,444 + AZOBR_RS30150 0.42 -2.6 103,579 + AZOBR_RS30150 0.60 -2.4 103,580 - AZOBR_RS30150 0.60 +0.1 103,666 + +1.1 103,747 + AZOBR_RS30150 0.81 -3.8 103,747 + AZOBR_RS30150 0.81 -0.3 103,787 - AZOBR_RS30150 0.87 +1.6 103,787 - +3.7 103,787 - AZOBR_RS30150 0.87 +0.1 103,964 + -0.5 103,964 + -0.4 103,964 + +1.1 103,964 + -0.1 103,964 + -1.3 103,965 - -0.9 103,965 - -1.9 103,965 - -0.8
Or see this region's nucleotide sequence