Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30080 and AZOBR_RS30085 are separated by 309 nucleotides AZOBR_RS30085 and AZOBR_RS30090 are separated by 75 nucleotides AZOBR_RS30090 and AZOBR_RS30095 are separated by 129 nucleotides
AZOBR_RS30080: AZOBR_RS30080 - flagellar hook protein, at 88,065 to 89,297
_RS30080
AZOBR_RS30085: AZOBR_RS30085 - DNA-binding protein, at 89,607 to 90,215
_RS30085
AZOBR_RS30090: AZOBR_RS30090 - hypothetical protein, at 90,291 to 90,614
_RS30090
AZOBR_RS30095: AZOBR_RS30095 - hypothetical protein, at 90,744 to 91,787
_RS30095
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.718 kb on - strand, within AZOBR_RS30080 at 88.810 kb on + strand, within AZOBR_RS30080 at 88.910 kb on - strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.099 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.192 kb on - strand at 89.314 kb on + strand at 89.315 kb on - strand at 89.376 kb on - strand at 89.401 kb on - strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.653 kb on - strand at 89.653 kb on - strand at 89.653 kb on - strand at 90.012 kb on + strand, within AZOBR_RS30085 at 90.012 kb on + strand, within AZOBR_RS30085 at 90.013 kb on - strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.031 kb on - strand, within AZOBR_RS30085 at 90.093 kb on + strand, within AZOBR_RS30085 at 90.094 kb on - strand, within AZOBR_RS30085 at 90.377 kb on - strand, within AZOBR_RS30090 at 90.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 88,718 - AZOBR_RS30080 0.53 +0.6 88,810 + AZOBR_RS30080 0.60 -0.9 88,910 - AZOBR_RS30080 0.69 -0.1 89,098 + AZOBR_RS30080 0.84 +0.7 89,098 + AZOBR_RS30080 0.84 -2.1 89,099 - AZOBR_RS30080 0.84 -0.7 89,132 - AZOBR_RS30080 0.87 -2.8 89,132 - AZOBR_RS30080 0.87 -2.7 89,192 - +0.3 89,314 + -0.6 89,315 - -0.6 89,376 - -0.4 89,401 - -0.2 89,652 + -0.6 89,652 + +0.6 89,652 + +0.8 89,653 - +1.1 89,653 - +0.5 89,653 - +0.5 90,012 + AZOBR_RS30085 0.67 +0.1 90,012 + AZOBR_RS30085 0.67 +1.0 90,013 - AZOBR_RS30085 0.67 +0.2 90,030 + AZOBR_RS30085 0.69 +0.5 90,030 + AZOBR_RS30085 0.69 +0.7 90,030 + AZOBR_RS30085 0.69 +0.5 90,030 + AZOBR_RS30085 0.69 +0.2 90,030 + AZOBR_RS30085 0.69 -2.7 90,031 - AZOBR_RS30085 0.70 +2.1 90,093 + AZOBR_RS30085 0.80 +1.1 90,094 - AZOBR_RS30085 0.80 -2.9 90,377 - AZOBR_RS30090 0.27 +1.7 90,670 + +0.3
Or see this region's nucleotide sequence