Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29785 and AZOBR_RS29790 are separated by 159 nucleotides AZOBR_RS29790 and AZOBR_RS29795 are separated by 142 nucleotides
AZOBR_RS29785: AZOBR_RS29785 - hypothetical protein, at 31,772 to 32,692
_RS29785
AZOBR_RS29790: AZOBR_RS29790 - 3-ketoacyl-ACP reductase, at 32,852 to 33,604
_RS29790
AZOBR_RS29795: AZOBR_RS29795 - dehydratase, at 33,747 to 34,952
_RS29795
Position (kb) 32
33
34 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 31.916 kb on + strand, within AZOBR_RS29785 at 31.917 kb on - strand, within AZOBR_RS29785 at 31.917 kb on - strand, within AZOBR_RS29785 at 32.120 kb on + strand, within AZOBR_RS29785 at 32.120 kb on + strand, within AZOBR_RS29785 at 32.121 kb on - strand, within AZOBR_RS29785 at 32.121 kb on - strand, within AZOBR_RS29785 at 32.211 kb on - strand, within AZOBR_RS29785 at 32.211 kb on - strand, within AZOBR_RS29785 at 32.595 kb on + strand, within AZOBR_RS29785 at 32.763 kb on + strand at 32.764 kb on - strand at 32.787 kb on - strand at 32.828 kb on + strand at 32.828 kb on + strand at 32.828 kb on + strand at 32.828 kb on + strand at 32.829 kb on - strand at 32.829 kb on - strand at 32.829 kb on - strand at 32.829 kb on - strand at 33.203 kb on + strand, within AZOBR_RS29790 at 33.203 kb on + strand, within AZOBR_RS29790 at 33.204 kb on - strand, within AZOBR_RS29790 at 33.204 kb on - strand, within AZOBR_RS29790 at 33.204 kb on - strand, within AZOBR_RS29790 at 33.204 kb on - strand, within AZOBR_RS29790 at 33.204 kb on - strand, within AZOBR_RS29790 at 33.204 kb on - strand, within AZOBR_RS29790 at 33.209 kb on + strand, within AZOBR_RS29790 at 33.209 kb on + strand, within AZOBR_RS29790 at 33.209 kb on + strand, within AZOBR_RS29790 at 33.210 kb on - strand, within AZOBR_RS29790 at 33.210 kb on - strand, within AZOBR_RS29790 at 33.312 kb on - strand, within AZOBR_RS29790 at 33.312 kb on - strand, within AZOBR_RS29790 at 33.312 kb on - strand, within AZOBR_RS29790 at 33.312 kb on - strand, within AZOBR_RS29790 at 33.312 kb on - strand, within AZOBR_RS29790 at 33.534 kb on - strand at 33.695 kb on + strand at 33.695 kb on + strand at 33.696 kb on - strand at 33.696 kb on - strand at 33.880 kb on - strand, within AZOBR_RS29795 at 33.918 kb on + strand, within AZOBR_RS29795 at 33.919 kb on - strand, within AZOBR_RS29795 at 34.068 kb on + strand, within AZOBR_RS29795 at 34.149 kb on + strand, within AZOBR_RS29795 at 34.150 kb on - strand, within AZOBR_RS29795 at 34.150 kb on - strand, within AZOBR_RS29795 at 34.150 kb on - strand, within AZOBR_RS29795 at 34.419 kb on + strand, within AZOBR_RS29795 at 34.419 kb on + strand, within AZOBR_RS29795 at 34.419 kb on + strand, within AZOBR_RS29795
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 31,916 + AZOBR_RS29785 0.16 -1.4 31,917 - AZOBR_RS29785 0.16 -0.5 31,917 - AZOBR_RS29785 0.16 +0.1 32,120 + AZOBR_RS29785 0.38 -0.9 32,120 + AZOBR_RS29785 0.38 +0.2 32,121 - AZOBR_RS29785 0.38 -2.8 32,121 - AZOBR_RS29785 0.38 -2.8 32,211 - AZOBR_RS29785 0.48 -3.3 32,211 - AZOBR_RS29785 0.48 -0.1 32,595 + AZOBR_RS29785 0.89 +0.5 32,763 + +0.7 32,764 - +1.0 32,787 - +0.3 32,828 + +1.1 32,828 + -0.3 32,828 + +0.5 32,828 + +0.5 32,829 - +0.2 32,829 - -4.1 32,829 - +0.3 32,829 - -0.0 33,203 + AZOBR_RS29790 0.47 -0.4 33,203 + AZOBR_RS29790 0.47 -0.2 33,204 - AZOBR_RS29790 0.47 -2.1 33,204 - AZOBR_RS29790 0.47 -0.0 33,204 - AZOBR_RS29790 0.47 -0.3 33,204 - AZOBR_RS29790 0.47 +0.2 33,204 - AZOBR_RS29790 0.47 +0.2 33,204 - AZOBR_RS29790 0.47 -2.1 33,209 + AZOBR_RS29790 0.47 -3.4 33,209 + AZOBR_RS29790 0.47 +0.0 33,209 + AZOBR_RS29790 0.47 +1.4 33,210 - AZOBR_RS29790 0.48 -0.4 33,210 - AZOBR_RS29790 0.48 -0.2 33,312 - AZOBR_RS29790 0.61 -1.0 33,312 - AZOBR_RS29790 0.61 -2.1 33,312 - AZOBR_RS29790 0.61 -0.9 33,312 - AZOBR_RS29790 0.61 -0.2 33,312 - AZOBR_RS29790 0.61 -1.0 33,534 - -0.3 33,695 + +0.7 33,695 + -0.5 33,696 - +0.9 33,696 - -1.0 33,880 - AZOBR_RS29795 0.11 -3.9 33,918 + AZOBR_RS29795 0.14 +0.8 33,919 - AZOBR_RS29795 0.14 -1.8 34,068 + AZOBR_RS29795 0.27 +0.9 34,149 + AZOBR_RS29795 0.33 -1.1 34,150 - AZOBR_RS29795 0.33 -0.0 34,150 - AZOBR_RS29795 0.33 +0.3 34,150 - AZOBR_RS29795 0.33 +0.4 34,419 + AZOBR_RS29795 0.56 +0.0 34,419 + AZOBR_RS29795 0.56 +0.5 34,419 + AZOBR_RS29795 0.56 -0.5
Or see this region's nucleotide sequence