Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29675 and AZOBR_RS29680 overlap by 4 nucleotides AZOBR_RS29680 and AZOBR_RS29685 overlap by 14 nucleotides AZOBR_RS29685 and AZOBR_RS29690 are separated by 21 nucleotides
AZOBR_RS29675: AZOBR_RS29675 - ABC transporter permease, at 6,669 to 7,706
_RS29675
AZOBR_RS29680: AZOBR_RS29680 - ABC transporter ATP-binding protein, at 7,703 to 8,521
_RS29680
AZOBR_RS29685: AZOBR_RS29685 - amino acid ABC transporter ATPase, at 8,508 to 9,212
_RS29685
AZOBR_RS29690: AZOBR_RS29690 - carbon monoxide dehydrogenase, at 9,234 to 11,603
_RS29690
Position (kb) 8
9
10 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7.572 kb on + strand, within AZOBR_RS29675 at 8.486 kb on + strand at 8.487 kb on - strand at 8.487 kb on - strand at 8.512 kb on + strand at 8.513 kb on - strand at 8.812 kb on - strand, within AZOBR_RS29685 at 9.090 kb on + strand, within AZOBR_RS29685 at 9.091 kb on - strand, within AZOBR_RS29685 at 9.091 kb on - strand, within AZOBR_RS29685 at 9.120 kb on + strand, within AZOBR_RS29685 at 9.120 kb on + strand, within AZOBR_RS29685 at 9.198 kb on + strand at 9.211 kb on - strand at 9.245 kb on + strand at 9.730 kb on + strand, within AZOBR_RS29690 at 9.937 kb on + strand, within AZOBR_RS29690 at 9.937 kb on + strand, within AZOBR_RS29690 at 9.938 kb on - strand, within AZOBR_RS29690 at 9.938 kb on - strand, within AZOBR_RS29690 at 9.938 kb on - strand, within AZOBR_RS29690 at 10.125 kb on + strand, within AZOBR_RS29690
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 7,572 + AZOBR_RS29675 0.87 -1.4 8,486 + +0.2 8,487 - -2.8 8,487 - +0.1 8,512 + -0.0 8,513 - -2.8 8,812 - AZOBR_RS29685 0.43 -2.1 9,090 + AZOBR_RS29685 0.83 -2.3 9,091 - AZOBR_RS29685 0.83 -0.1 9,091 - AZOBR_RS29685 0.83 -0.4 9,120 + AZOBR_RS29685 0.87 -0.5 9,120 + AZOBR_RS29685 0.87 -0.2 9,198 + -2.4 9,211 - +0.4 9,245 + +0.0 9,730 + AZOBR_RS29690 0.21 +0.4 9,937 + AZOBR_RS29690 0.30 -0.7 9,937 + AZOBR_RS29690 0.30 +2.0 9,938 - AZOBR_RS29690 0.30 -3.5 9,938 - AZOBR_RS29690 0.30 -0.4 9,938 - AZOBR_RS29690 0.30 +0.8 10,125 + AZOBR_RS29690 0.38 -0.4
Or see this region's nucleotide sequence