Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29625 and AZOBR_RS29630 are separated by 121 nucleotides AZOBR_RS29630 and AZOBR_RS26115 are separated by 132 nucleotides
AZOBR_RS29625: AZOBR_RS29625 - agmatinase, at 775,717 to 776,787
_RS29625
AZOBR_RS29630: AZOBR_RS29630 - amidase hydantoinase/carbamoylase family, at 776,909 to 778,102
_RS29630
AZOBR_RS26115: AZOBR_RS26115 - hypothetical protein, at 778,235 to 778,804
_RS26115
Position (kb) 776
777
778
779 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 775.981 kb on + strand, within AZOBR_RS29625 at 775.981 kb on + strand, within AZOBR_RS29625 at 775.982 kb on - strand, within AZOBR_RS29625 at 776.033 kb on - strand, within AZOBR_RS29625 at 776.065 kb on + strand, within AZOBR_RS29625 at 776.065 kb on + strand, within AZOBR_RS29625 at 776.066 kb on - strand, within AZOBR_RS29625 at 776.185 kb on + strand, within AZOBR_RS29625 at 776.186 kb on - strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.417 kb on - strand, within AZOBR_RS29625 at 776.417 kb on - strand, within AZOBR_RS29625 at 776.507 kb on - strand, within AZOBR_RS29625 at 776.527 kb on + strand, within AZOBR_RS29625 at 776.527 kb on + strand, within AZOBR_RS29625 at 776.528 kb on - strand, within AZOBR_RS29625 at 776.620 kb on + strand, within AZOBR_RS29625 at 776.620 kb on + strand, within AZOBR_RS29625 at 776.620 kb on + strand, within AZOBR_RS29625 at 776.621 kb on - strand, within AZOBR_RS29625 at 776.710 kb on + strand at 776.710 kb on + strand at 776.726 kb on - strand at 776.737 kb on + strand at 776.737 kb on + strand at 776.737 kb on + strand at 776.738 kb on - strand at 776.738 kb on - strand at 776.738 kb on - strand at 776.851 kb on + strand at 776.851 kb on + strand at 776.851 kb on + strand at 776.851 kb on + strand at 776.852 kb on - strand at 777.093 kb on - strand, within AZOBR_RS29630 at 777.590 kb on + strand, within AZOBR_RS29630 at 778.154 kb on - strand at 778.652 kb on + strand, within AZOBR_RS26115 at 778.652 kb on + strand, within AZOBR_RS26115 at 778.653 kb on - strand, within AZOBR_RS26115 at 778.653 kb on - strand, within AZOBR_RS26115 at 778.653 kb on - strand, within AZOBR_RS26115 at 778.653 kb on - strand, within AZOBR_RS26115
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 775,981 + AZOBR_RS29625 0.25 +1.3 775,981 + AZOBR_RS29625 0.25 +0.6 775,982 - AZOBR_RS29625 0.25 +0.4 776,033 - AZOBR_RS29625 0.30 +1.3 776,065 + AZOBR_RS29625 0.32 +1.1 776,065 + AZOBR_RS29625 0.32 -3.4 776,066 - AZOBR_RS29625 0.33 +0.5 776,185 + AZOBR_RS29625 0.44 -1.9 776,186 - AZOBR_RS29625 0.44 -1.0 776,347 + AZOBR_RS29625 0.59 +0.3 776,347 + AZOBR_RS29625 0.59 -2.7 776,347 + AZOBR_RS29625 0.59 +0.2 776,348 - AZOBR_RS29625 0.59 +0.8 776,348 - AZOBR_RS29625 0.59 +1.1 776,348 - AZOBR_RS29625 0.59 -1.2 776,348 - AZOBR_RS29625 0.59 +0.2 776,348 - AZOBR_RS29625 0.59 +0.0 776,417 - AZOBR_RS29625 0.65 -1.2 776,417 - AZOBR_RS29625 0.65 -0.1 776,507 - AZOBR_RS29625 0.74 -0.7 776,527 + AZOBR_RS29625 0.76 +0.3 776,527 + AZOBR_RS29625 0.76 -0.4 776,528 - AZOBR_RS29625 0.76 +0.3 776,620 + AZOBR_RS29625 0.84 -0.4 776,620 + AZOBR_RS29625 0.84 -4.0 776,620 + AZOBR_RS29625 0.84 +0.1 776,621 - AZOBR_RS29625 0.84 -0.8 776,710 + -0.2 776,710 + -1.6 776,726 - +1.0 776,737 + -1.3 776,737 + +0.0 776,737 + +0.9 776,738 - -1.0 776,738 - -0.1 776,738 - +0.1 776,851 + +0.4 776,851 + +0.2 776,851 + -0.2 776,851 + +0.6 776,852 - +0.4 777,093 - AZOBR_RS29630 0.15 +0.4 777,590 + AZOBR_RS29630 0.57 +0.6 778,154 - -0.1 778,652 + AZOBR_RS26115 0.73 -2.2 778,652 + AZOBR_RS26115 0.73 -2.5 778,653 - AZOBR_RS26115 0.73 -0.9 778,653 - AZOBR_RS26115 0.73 -3.7 778,653 - AZOBR_RS26115 0.73 +0.1 778,653 - AZOBR_RS26115 0.73 -1.1
Or see this region's nucleotide sequence