Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29610 and AZOBR_RS29615 are separated by 36 nucleotides AZOBR_RS29615 and AZOBR_RS29620 are separated by 11 nucleotides AZOBR_RS29620 and AZOBR_RS29625 are separated by 114 nucleotides
AZOBR_RS29610: AZOBR_RS29610 - hypothetical protein, at 773,294 to 773,959
_RS29610
AZOBR_RS29615: AZOBR_RS29615 - arginine ABC transporter ATP-binding protein, at 773,996 to 774,751
_RS29615
AZOBR_RS29620: AZOBR_RS29620 - cyclohexadienyl dehydratase precursor, at 774,763 to 775,602
_RS29620
AZOBR_RS29625: AZOBR_RS29625 - agmatinase, at 775,717 to 776,787
_RS29625
Position (kb) 774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.849 kb on + strand, within AZOBR_RS29610 at 773.903 kb on + strand at 774.026 kb on + strand at 774.026 kb on + strand at 774.194 kb on + strand, within AZOBR_RS29615 at 774.194 kb on + strand, within AZOBR_RS29615 at 774.194 kb on + strand at 774.195 kb on - strand, within AZOBR_RS29615 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.890 kb on - strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.949 kb on + strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 774.950 kb on - strand, within AZOBR_RS29620 at 775.126 kb on + strand, within AZOBR_RS29620 at 775.127 kb on - strand, within AZOBR_RS29620 at 775.127 kb on - strand, within AZOBR_RS29620 at 775.127 kb on - strand, within AZOBR_RS29620 at 775.537 kb on + strand at 775.537 kb on + strand at 775.537 kb on + strand at 775.537 kb on + strand at 775.537 kb on + strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.538 kb on - strand at 775.556 kb on - strand at 775.822 kb on + strand at 775.823 kb on - strand at 775.903 kb on + strand, within AZOBR_RS29625 at 775.903 kb on + strand, within AZOBR_RS29625 at 775.904 kb on - strand, within AZOBR_RS29625 at 775.904 kb on - strand, within AZOBR_RS29625 at 775.904 kb on - strand, within AZOBR_RS29625 at 775.981 kb on + strand, within AZOBR_RS29625 at 775.981 kb on + strand, within AZOBR_RS29625 at 775.982 kb on - strand, within AZOBR_RS29625 at 776.033 kb on - strand, within AZOBR_RS29625 at 776.065 kb on + strand, within AZOBR_RS29625 at 776.065 kb on + strand, within AZOBR_RS29625 at 776.066 kb on - strand, within AZOBR_RS29625 at 776.185 kb on + strand, within AZOBR_RS29625 at 776.186 kb on - strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.347 kb on + strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.348 kb on - strand, within AZOBR_RS29625 at 776.417 kb on - strand, within AZOBR_RS29625 at 776.417 kb on - strand, within AZOBR_RS29625 at 776.507 kb on - strand, within AZOBR_RS29625 at 776.527 kb on + strand, within AZOBR_RS29625 at 776.527 kb on + strand, within AZOBR_RS29625 at 776.528 kb on - strand, within AZOBR_RS29625
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 773,849 + AZOBR_RS29610 0.83 -0.2 773,849 + AZOBR_RS29610 0.83 +2.7 773,903 + +0.8 774,026 + +0.1 774,026 + -2.8 774,194 + AZOBR_RS29615 0.26 +0.2 774,194 + AZOBR_RS29615 0.26 -2.8 774,194 + +0.3 774,195 - AZOBR_RS29615 0.26 -1.2 774,890 - AZOBR_RS29620 0.15 +1.0 774,890 - AZOBR_RS29620 0.15 +1.0 774,949 + AZOBR_RS29620 0.22 -3.8 774,949 + AZOBR_RS29620 0.22 +0.4 774,949 + AZOBR_RS29620 0.22 +1.3 774,950 - AZOBR_RS29620 0.22 -1.8 774,950 - AZOBR_RS29620 0.22 -0.1 774,950 - AZOBR_RS29620 0.22 -2.4 774,950 - AZOBR_RS29620 0.22 -1.3 774,950 - AZOBR_RS29620 0.22 -2.1 775,126 + AZOBR_RS29620 0.43 +0.3 775,127 - AZOBR_RS29620 0.43 +1.8 775,127 - AZOBR_RS29620 0.43 +0.2 775,127 - AZOBR_RS29620 0.43 -3.6 775,537 + -0.1 775,537 + -0.1 775,537 + +0.7 775,537 + +0.3 775,537 + -1.2 775,538 - -0.6 775,538 - +1.6 775,538 - +0.8 775,538 - -0.6 775,538 - +0.6 775,538 - +0.2 775,538 - +0.3 775,538 - -0.2 775,538 - -2.7 775,538 - -1.7 775,538 - +0.4 775,538 - -0.0 775,538 - -0.3 775,556 - -1.6 775,822 + -4.2 775,823 - +0.7 775,903 + AZOBR_RS29625 0.17 -2.4 775,903 + AZOBR_RS29625 0.17 -0.7 775,904 - AZOBR_RS29625 0.17 +0.4 775,904 - AZOBR_RS29625 0.17 +1.0 775,904 - AZOBR_RS29625 0.17 +0.2 775,981 + AZOBR_RS29625 0.25 +1.3 775,981 + AZOBR_RS29625 0.25 +0.6 775,982 - AZOBR_RS29625 0.25 +0.4 776,033 - AZOBR_RS29625 0.30 +1.3 776,065 + AZOBR_RS29625 0.32 +1.1 776,065 + AZOBR_RS29625 0.32 -3.4 776,066 - AZOBR_RS29625 0.33 +0.5 776,185 + AZOBR_RS29625 0.44 -1.9 776,186 - AZOBR_RS29625 0.44 -1.0 776,347 + AZOBR_RS29625 0.59 +0.3 776,347 + AZOBR_RS29625 0.59 -2.7 776,347 + AZOBR_RS29625 0.59 +0.2 776,348 - AZOBR_RS29625 0.59 +0.8 776,348 - AZOBR_RS29625 0.59 +1.1 776,348 - AZOBR_RS29625 0.59 -1.2 776,348 - AZOBR_RS29625 0.59 +0.2 776,348 - AZOBR_RS29625 0.59 +0.0 776,417 - AZOBR_RS29625 0.65 -1.2 776,417 - AZOBR_RS29625 0.65 -0.1 776,507 - AZOBR_RS29625 0.74 -0.7 776,527 + AZOBR_RS29625 0.76 +0.3 776,527 + AZOBR_RS29625 0.76 -0.4 776,528 - AZOBR_RS29625 0.76 +0.3
Or see this region's nucleotide sequence