Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29370 and AZOBR_RS29375 are separated by 716 nucleotides AZOBR_RS29375 and AZOBR_RS29380 are separated by 26 nucleotides AZOBR_RS29380 and AZOBR_RS29385 are separated by 79 nucleotides
AZOBR_RS29370: AZOBR_RS29370 - integrase, at 709,955 to 710,959
_RS29370
AZOBR_RS29375: AZOBR_RS29375 - protein norD, at 711,676 to 713,598
_RS29375
AZOBR_RS29380: AZOBR_RS29380 - ATPase AAA, at 713,625 to 714,437
_RS29380
AZOBR_RS29385: AZOBR_RS29385 - nitric oxide reductase, at 714,517 to 715,869
_RS29385
Position (kb)
711
712
713
714 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 710.924 kb on + strand at 710.940 kb on + strand at 710.941 kb on - strand at 710.957 kb on + strand at 710.958 kb on - strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 710.982 kb on + strand at 711.007 kb on - strand at 711.209 kb on + strand at 711.210 kb on - strand at 711.210 kb on - strand at 711.210 kb on - strand at 711.303 kb on + strand at 711.304 kb on - strand at 711.304 kb on - strand at 711.304 kb on - strand at 711.414 kb on - strand at 711.582 kb on - strand at 711.667 kb on + strand at 711.667 kb on + strand at 711.668 kb on - strand at 711.669 kb on + strand at 711.670 kb on - strand at 711.670 kb on - strand at 711.768 kb on - strand at 711.862 kb on + strand at 711.862 kb on + strand at 711.863 kb on - strand at 711.869 kb on + strand, within AZOBR_RS29375 at 711.882 kb on - strand, within AZOBR_RS29375 at 711.996 kb on - strand, within AZOBR_RS29375 at 711.996 kb on - strand, within AZOBR_RS29375 at 712.278 kb on - strand, within AZOBR_RS29375 at 712.511 kb on + strand, within AZOBR_RS29375 at 712.541 kb on + strand, within AZOBR_RS29375 at 712.940 kb on + strand, within AZOBR_RS29375 at 713.268 kb on - strand, within AZOBR_RS29375 at 713.983 kb on + strand, within AZOBR_RS29380 at 713.983 kb on + strand, within AZOBR_RS29380 at 714.121 kb on + strand, within AZOBR_RS29380 at 714.248 kb on - strand, within AZOBR_RS29380 at 714.248 kb on - strand, within AZOBR_RS29380 at 714.385 kb on + strand at 714.385 kb on + strand at 714.385 kb on + strand at 714.386 kb on - strand at 714.386 kb on - strand at 714.386 kb on - strand at 714.386 kb on - strand at 714.388 kb on + strand at 714.389 kb on - strand at 714.591 kb on - strand at 714.591 kb on - strand at 714.591 kb on - strand at 714.596 kb on + strand at 714.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 710,924 + -0.6 710,940 + -2.8 710,941 - +1.0 710,957 + -3.5 710,958 - -4.2 710,982 + +1.7 710,982 + -2.5 710,982 + +0.3 710,982 + -0.3 710,982 + +0.5 710,982 + -0.9 711,007 - -0.4 711,209 + +0.4 711,210 - -1.6 711,210 - +0.2 711,210 - -1.9 711,303 + +1.5 711,304 - -0.1 711,304 - -5.0 711,304 - -0.2 711,414 - -1.5 711,582 - -0.8 711,667 + +0.8 711,667 + +0.2 711,668 - -0.1 711,669 + +0.8 711,670 - -0.9 711,670 - -2.4 711,768 - +0.3 711,862 + +1.0 711,862 + +0.2 711,863 - +0.5 711,869 + AZOBR_RS29375 0.10 -1.9 711,882 - AZOBR_RS29375 0.11 -1.3 711,996 - AZOBR_RS29375 0.17 -0.4 711,996 - AZOBR_RS29375 0.17 -2.5 712,278 - AZOBR_RS29375 0.31 -2.9 712,511 + AZOBR_RS29375 0.43 +0.3 712,541 + AZOBR_RS29375 0.45 +2.5 712,940 + AZOBR_RS29375 0.66 +1.1 713,268 - AZOBR_RS29375 0.83 -1.1 713,983 + AZOBR_RS29380 0.44 +1.6 713,983 + AZOBR_RS29380 0.44 -2.9 714,121 + AZOBR_RS29380 0.61 +0.1 714,248 - AZOBR_RS29380 0.77 +0.5 714,248 - AZOBR_RS29380 0.77 -1.3 714,385 + +0.0 714,385 + -1.1 714,385 + -2.7 714,386 - +0.4 714,386 - -0.3 714,386 - +0.1 714,386 - +0.1 714,388 + -0.8 714,389 - -0.7 714,591 - +0.0 714,591 - -5.3 714,591 - +0.1 714,596 + +0.5 714,597 - -4.1
Or see this region's nucleotide sequence