Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29175 and AZOBR_RS29180 are separated by 344 nucleotides
AZOBR_RS29175: AZOBR_RS29175 - IclR family transcriptional regulator, at 671,286 to 672,074
_RS29175
AZOBR_RS29180: AZOBR_RS29180 - CoA-transferase, at 672,419 to 673,660
_RS29180
Position (kb) 671
672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 670.292 kb on + strand at 670.292 kb on + strand at 670.292 kb on + strand at 670.293 kb on - strand at 670.293 kb on - strand at 670.293 kb on - strand at 670.293 kb on - strand at 670.376 kb on + strand at 670.376 kb on + strand at 670.377 kb on - strand at 670.377 kb on - strand at 670.377 kb on - strand at 670.535 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.678 kb on + strand at 670.679 kb on - strand at 670.919 kb on + strand at 670.919 kb on + strand at 670.920 kb on - strand at 670.920 kb on - strand at 670.955 kb on + strand at 670.956 kb on - strand at 670.956 kb on - strand at 670.956 kb on - strand at 670.956 kb on - strand at 670.956 kb on - strand at 671.068 kb on + strand at 671.068 kb on + strand at 671.345 kb on + strand at 671.346 kb on - strand at 671.346 kb on - strand at 671.346 kb on - strand at 671.470 kb on + strand, within AZOBR_RS29175 at 671.471 kb on - strand, within AZOBR_RS29175 at 671.486 kb on - strand, within AZOBR_RS29175 at 671.486 kb on - strand, within AZOBR_RS29175 at 671.641 kb on + strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.914 kb on + strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 672.095 kb on + strand at 672.227 kb on - strand at 672.615 kb on - strand, within AZOBR_RS29180 at 672.617 kb on + strand, within AZOBR_RS29180 at 672.617 kb on + strand, within AZOBR_RS29180 at 672.617 kb on + strand, within AZOBR_RS29180 at 672.618 kb on - strand, within AZOBR_RS29180 at 672.618 kb on - strand, within AZOBR_RS29180 at 672.618 kb on - strand, within AZOBR_RS29180 at 672.800 kb on + strand, within AZOBR_RS29180 at 672.801 kb on - strand, within AZOBR_RS29180 at 672.836 kb on + strand, within AZOBR_RS29180 at 672.836 kb on + strand, within AZOBR_RS29180 at 672.836 kb on + strand, within AZOBR_RS29180 at 672.854 kb on + strand, within AZOBR_RS29180 at 672.974 kb on + strand, within AZOBR_RS29180 at 672.974 kb on + strand, within AZOBR_RS29180 at 672.975 kb on - strand, within AZOBR_RS29180
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 670,292 + -3.5 670,292 + -0.6 670,292 + +1.4 670,293 - -1.0 670,293 - -2.7 670,293 - -1.0 670,293 - -0.2 670,376 + +1.3 670,376 + -0.4 670,377 - +0.6 670,377 - -0.4 670,377 - +0.0 670,535 + +0.6 670,669 + -1.0 670,669 + -0.9 670,669 + +1.1 670,669 + -0.5 670,669 + -0.0 670,670 - -0.1 670,670 - +0.6 670,678 + +0.5 670,679 - +0.5 670,919 + +0.2 670,919 + +0.4 670,920 - +0.7 670,920 - -0.1 670,955 + -1.1 670,956 - -0.4 670,956 - +0.3 670,956 - -0.5 670,956 - +0.7 670,956 - -0.7 671,068 + +0.9 671,068 + +0.0 671,345 + +1.8 671,346 - -0.0 671,346 - +1.0 671,346 - -0.0 671,470 + AZOBR_RS29175 0.23 +1.8 671,471 - AZOBR_RS29175 0.23 +0.3 671,486 - AZOBR_RS29175 0.25 +0.3 671,486 - AZOBR_RS29175 0.25 -0.7 671,641 + AZOBR_RS29175 0.45 -0.2 671,885 - AZOBR_RS29175 0.76 +1.1 671,885 - AZOBR_RS29175 0.76 -0.2 671,885 - AZOBR_RS29175 0.76 +1.2 671,885 - AZOBR_RS29175 0.76 +0.4 671,914 + AZOBR_RS29175 0.80 -0.7 671,915 - AZOBR_RS29175 0.80 +0.8 671,915 - AZOBR_RS29175 0.80 +0.4 671,915 - AZOBR_RS29175 0.80 +1.5 671,915 - AZOBR_RS29175 0.80 +0.3 671,915 - AZOBR_RS29175 0.80 +1.6 672,095 + +0.8 672,227 - +0.7 672,615 - AZOBR_RS29180 0.16 +0.6 672,617 + AZOBR_RS29180 0.16 +0.5 672,617 + AZOBR_RS29180 0.16 +1.5 672,617 + AZOBR_RS29180 0.16 -2.0 672,618 - AZOBR_RS29180 0.16 -0.6 672,618 - AZOBR_RS29180 0.16 -0.2 672,618 - AZOBR_RS29180 0.16 -0.9 672,800 + AZOBR_RS29180 0.31 +2.2 672,801 - AZOBR_RS29180 0.31 -1.0 672,836 + AZOBR_RS29180 0.34 -2.6 672,836 + AZOBR_RS29180 0.34 +0.3 672,836 + AZOBR_RS29180 0.34 -3.9 672,854 + AZOBR_RS29180 0.35 -0.3 672,974 + AZOBR_RS29180 0.45 +0.0 672,974 + AZOBR_RS29180 0.45 +1.3 672,975 - AZOBR_RS29180 0.45 -1.0
Or see this region's nucleotide sequence