Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27555 and AZOBR_RS27560 are separated by 482 nucleotides AZOBR_RS27560 and AZOBR_RS27565 are separated by 14 nucleotides
AZOBR_RS27555: AZOBR_RS27555 - hypothetical protein, at 344,289 to 344,822
_RS27555
AZOBR_RS27560: AZOBR_RS27560 - hypothetical protein, at 345,305 to 345,634
_RS27560
AZOBR_RS27565: AZOBR_RS27565 - GntR family transcriptional regulator, at 345,649 to 347,049
_RS27565
Position (kb) 345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 344.392 kb on + strand, within AZOBR_RS27555 at 344.485 kb on + strand, within AZOBR_RS27555 at 344.485 kb on + strand, within AZOBR_RS27555 at 344.486 kb on - strand, within AZOBR_RS27555 at 344.533 kb on + strand, within AZOBR_RS27555 at 344.533 kb on + strand, within AZOBR_RS27555 at 344.533 kb on + strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.534 kb on - strand, within AZOBR_RS27555 at 344.542 kb on + strand, within AZOBR_RS27555 at 344.629 kb on + strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.630 kb on - strand, within AZOBR_RS27555 at 344.822 kb on + strand at 344.823 kb on - strand at 344.823 kb on - strand at 345.025 kb on + strand at 345.026 kb on + strand at 345.026 kb on - strand at 345.026 kb on - strand at 345.026 kb on - strand at 345.102 kb on + strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.103 kb on - strand at 345.805 kb on + strand, within AZOBR_RS27565 at 345.805 kb on + strand, within AZOBR_RS27565 at 345.806 kb on - strand, within AZOBR_RS27565 at 345.859 kb on + strand, within AZOBR_RS27565 at 345.860 kb on - strand, within AZOBR_RS27565 at 345.860 kb on - strand, within AZOBR_RS27565 at 346.078 kb on + strand, within AZOBR_RS27565 at 346.078 kb on + strand, within AZOBR_RS27565 at 346.259 kb on - strand, within AZOBR_RS27565 at 346.381 kb on + strand, within AZOBR_RS27565 at 346.381 kb on + strand, within AZOBR_RS27565 at 346.381 kb on + strand, within AZOBR_RS27565 at 346.381 kb on + strand, within AZOBR_RS27565 at 346.382 kb on - strand, within AZOBR_RS27565 at 346.382 kb on - strand, within AZOBR_RS27565 at 346.470 kb on + strand, within AZOBR_RS27565 at 346.613 kb on - strand, within AZOBR_RS27565
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 344,392 + AZOBR_RS27555 0.19 +0.0 344,485 + AZOBR_RS27555 0.37 +0.6 344,485 + AZOBR_RS27555 0.37 -0.8 344,486 - AZOBR_RS27555 0.37 +0.4 344,533 + AZOBR_RS27555 0.46 +1.0 344,533 + AZOBR_RS27555 0.46 +1.4 344,533 + AZOBR_RS27555 0.46 +1.6 344,534 - AZOBR_RS27555 0.46 +0.3 344,534 - AZOBR_RS27555 0.46 +0.9 344,534 - AZOBR_RS27555 0.46 -3.1 344,534 - AZOBR_RS27555 0.46 +0.1 344,542 + AZOBR_RS27555 0.47 -3.1 344,629 + AZOBR_RS27555 0.64 -1.0 344,630 - AZOBR_RS27555 0.64 +0.4 344,630 - AZOBR_RS27555 0.64 -1.1 344,630 - AZOBR_RS27555 0.64 +1.0 344,630 - AZOBR_RS27555 0.64 +0.7 344,822 + +0.1 344,823 - +0.8 344,823 - -2.8 345,025 + -0.0 345,026 + -0.9 345,026 - -1.8 345,026 - -3.1 345,026 - +1.6 345,102 + +1.3 345,103 - +1.7 345,103 - -2.5 345,103 - +0.1 345,103 - +1.5 345,103 - -1.4 345,805 + AZOBR_RS27565 0.11 -1.1 345,805 + AZOBR_RS27565 0.11 +1.0 345,806 - AZOBR_RS27565 0.11 +0.7 345,859 + AZOBR_RS27565 0.15 -1.1 345,860 - AZOBR_RS27565 0.15 -2.0 345,860 - AZOBR_RS27565 0.15 +0.3 346,078 + AZOBR_RS27565 0.31 +0.8 346,078 + AZOBR_RS27565 0.31 -0.3 346,259 - AZOBR_RS27565 0.44 +0.1 346,381 + AZOBR_RS27565 0.52 +0.9 346,381 + AZOBR_RS27565 0.52 +1.5 346,381 + AZOBR_RS27565 0.52 +0.4 346,381 + AZOBR_RS27565 0.52 +0.1 346,382 - AZOBR_RS27565 0.52 +0.2 346,382 - AZOBR_RS27565 0.52 +0.5 346,470 + AZOBR_RS27565 0.59 +0.1 346,613 - AZOBR_RS27565 0.69 -0.7
Or see this region's nucleotide sequence