Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26430 and AZOBR_RS26435 are separated by 220 nucleotides AZOBR_RS26435 and AZOBR_RS26440 are separated by 159 nucleotides
AZOBR_RS26430: AZOBR_RS26430 - ABC transporter permease, at 74,384 to 76,273
_RS26430
AZOBR_RS26435: AZOBR_RS26435 - ABC transporter substrate-binding protein, at 76,494 to 77,510
_RS26435
AZOBR_RS26440: AZOBR_RS26440 - transketolase, at 77,670 to 78,680
_RS26440
Position (kb) 76
77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 75.651 kb on + strand, within AZOBR_RS26430 at 75.652 kb on - strand, within AZOBR_RS26430 at 76.095 kb on + strand at 76.546 kb on + strand at 76.546 kb on + strand at 76.547 kb on - strand at 76.828 kb on + strand, within AZOBR_RS26435 at 77.153 kb on - strand, within AZOBR_RS26435 at 77.153 kb on - strand, within AZOBR_RS26435 at 77.153 kb on - strand, within AZOBR_RS26435 at 77.401 kb on + strand, within AZOBR_RS26435 at 77.401 kb on + strand, within AZOBR_RS26435 at 77.402 kb on - strand, within AZOBR_RS26435 at 77.402 kb on - strand, within AZOBR_RS26435 at 77.584 kb on + strand at 77.671 kb on + strand at 77.672 kb on - strand at 77.672 kb on - strand at 77.720 kb on - strand at 78.083 kb on - strand, within AZOBR_RS26440 at 78.088 kb on + strand, within AZOBR_RS26440 at 78.134 kb on - strand, within AZOBR_RS26440 at 78.134 kb on - strand, within AZOBR_RS26440 at 78.268 kb on + strand, within AZOBR_RS26440 at 78.350 kb on - strand, within AZOBR_RS26440 at 78.350 kb on - strand, within AZOBR_RS26440 at 78.377 kb on - strand, within AZOBR_RS26440 at 78.460 kb on + strand, within AZOBR_RS26440 at 78.505 kb on + strand, within AZOBR_RS26440 at 78.506 kb on - strand, within AZOBR_RS26440 at 78.506 kb on - strand, within AZOBR_RS26440
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 75,651 + AZOBR_RS26430 0.67 -1.1 75,652 - AZOBR_RS26430 0.67 -0.3 76,095 + -0.3 76,546 + -0.4 76,546 + -0.2 76,547 - -1.3 76,828 + AZOBR_RS26435 0.33 -2.5 77,153 - AZOBR_RS26435 0.65 -3.9 77,153 - AZOBR_RS26435 0.65 +0.2 77,153 - AZOBR_RS26435 0.65 -0.2 77,401 + AZOBR_RS26435 0.89 -1.1 77,401 + AZOBR_RS26435 0.89 +0.4 77,402 - AZOBR_RS26435 0.89 -0.2 77,402 - AZOBR_RS26435 0.89 -4.1 77,584 + +0.7 77,671 + -3.4 77,672 - +0.4 77,672 - +1.8 77,720 - +0.2 78,083 - AZOBR_RS26440 0.41 -0.7 78,088 + AZOBR_RS26440 0.41 +1.6 78,134 - AZOBR_RS26440 0.46 +0.3 78,134 - AZOBR_RS26440 0.46 +0.8 78,268 + AZOBR_RS26440 0.59 +0.5 78,350 - AZOBR_RS26440 0.67 -0.9 78,350 - AZOBR_RS26440 0.67 -1.1 78,377 - AZOBR_RS26440 0.70 -3.5 78,460 + AZOBR_RS26440 0.78 +0.5 78,505 + AZOBR_RS26440 0.83 -0.8 78,506 - AZOBR_RS26440 0.83 -0.0 78,506 - AZOBR_RS26440 0.83 +0.4
Or see this region's nucleotide sequence