Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26410

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26400 and AZOBR_RS26405 are separated by 81 nucleotidesAZOBR_RS26405 and AZOBR_RS26410 overlap by 14 nucleotidesAZOBR_RS26410 and AZOBR_RS26415 are separated by 14 nucleotidesAZOBR_RS26415 and AZOBR_RS26420 are separated by 30 nucleotides AZOBR_RS26400: AZOBR_RS26400 - ABC transporter substrate-binding protein, at 68,834 to 69,637 _RS26400 AZOBR_RS26405: AZOBR_RS26405 - amino acid ABC transporter ATP-binding protein, at 69,719 to 70,447 _RS26405 AZOBR_RS26410: AZOBR_RS26410 - amino acid ABC transporter permease, at 70,434 to 71,084 _RS26410 AZOBR_RS26415: AZOBR_RS26415 - ABC transporter permease, at 71,099 to 71,758 _RS26415 AZOBR_RS26420: AZOBR_RS26420 - amino acid deaminase, at 71,789 to 73,087 _RS26420 Position (kb) 70 71 72Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 70.410 kb on + strandat 70.410 kb on + strandat 70.411 kb on - strandat 70.504 kb on + strand, within AZOBR_RS26410at 70.505 kb on - strand, within AZOBR_RS26410at 70.505 kb on - strand, within AZOBR_RS26410at 70.687 kb on + strand, within AZOBR_RS26410at 70.799 kb on - strand, within AZOBR_RS26410at 71.178 kb on + strand, within AZOBR_RS26415at 71.178 kb on + strand, within AZOBR_RS26415at 71.178 kb on + strand, within AZOBR_RS26415at 71.200 kb on - strand, within AZOBR_RS26415at 71.200 kb on - strand, within AZOBR_RS26415at 71.217 kb on + strand, within AZOBR_RS26415at 71.460 kb on + strand, within AZOBR_RS26415at 71.461 kb on - strand, within AZOBR_RS26415at 71.473 kb on - strand, within AZOBR_RS26415at 71.592 kb on + strand, within AZOBR_RS26415at 71.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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70,410 + -2.3
70,410 + +1.0
70,411 - +1.5
70,504 + AZOBR_RS26410 0.11 -0.1
70,505 - AZOBR_RS26410 0.11 +0.4
70,505 - AZOBR_RS26410 0.11 -1.5
70,687 + AZOBR_RS26410 0.39 -0.4
70,799 - AZOBR_RS26410 0.56 -0.3
71,178 + AZOBR_RS26415 0.12 +0.4
71,178 + AZOBR_RS26415 0.12 -0.4
71,178 + AZOBR_RS26415 0.12 +1.0
71,200 - AZOBR_RS26415 0.15 -3.9
71,200 - AZOBR_RS26415 0.15 -1.2
71,217 + AZOBR_RS26415 0.18 +0.8
71,460 + AZOBR_RS26415 0.55 +2.3
71,461 - AZOBR_RS26415 0.55 -0.4
71,473 - AZOBR_RS26415 0.57 -0.3
71,592 + AZOBR_RS26415 0.75 +1.6
71,808 + -0.8

Or see this region's nucleotide sequence