Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24060

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24060 and AZOBR_RS24065 are separated by 463 nucleotides AZOBR_RS24060: AZOBR_RS24060 - multidrug transporter, at 435,941 to 437,047 _RS24060 AZOBR_RS24065: AZOBR_RS24065 - aspartate aminotransferase, at 437,511 to 438,689 _RS24065 Position (kb) 435 436 437 438Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 435.112 kb on - strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.153 kb on + strandat 435.154 kb on - strandat 435.154 kb on - strandat 435.154 kb on - strandat 435.244 kb on - strandat 435.447 kb on + strandat 435.747 kb on + strandat 436.092 kb on + strand, within AZOBR_RS24060at 436.092 kb on + strand, within AZOBR_RS24060at 436.092 kb on + strand, within AZOBR_RS24060at 436.092 kb on + strand, within AZOBR_RS24060at 436.092 kb on + strand, within AZOBR_RS24060at 436.092 kb on + strand, within AZOBR_RS24060at 436.092 kb on + strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.093 kb on - strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.098 kb on + strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.099 kb on - strand, within AZOBR_RS24060at 436.321 kb on - strand, within AZOBR_RS24060at 436.321 kb on - strand, within AZOBR_RS24060at 436.461 kb on + strand, within AZOBR_RS24060at 436.461 kb on + strand, within AZOBR_RS24060at 436.461 kb on + strand, within AZOBR_RS24060at 436.461 kb on + strand, within AZOBR_RS24060at 436.462 kb on - strand, within AZOBR_RS24060at 436.462 kb on - strand, within AZOBR_RS24060at 436.462 kb on - strandat 436.462 kb on - strand, within AZOBR_RS24060at 436.524 kb on + strand, within AZOBR_RS24060at 436.525 kb on - strand, within AZOBR_RS24060at 436.525 kb on - strand, within AZOBR_RS24060at 436.584 kb on + strand, within AZOBR_RS24060at 436.585 kb on - strand, within AZOBR_RS24060at 437.286 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.308 kb on + strandat 437.324 kb on + strandat 437.342 kb on + strandat 437.890 kb on + strand, within AZOBR_RS24065at 437.891 kb on - strand, within AZOBR_RS24065at 437.918 kb on + strand, within AZOBR_RS24065at 437.919 kb on - strand, within AZOBR_RS24065at 437.919 kb on - strand, within AZOBR_RS24065

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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435,112 - -0.9
435,153 + +0.1
435,153 + -0.9
435,153 + +0.9
435,153 + -0.1
435,153 + -4.3
435,153 + +0.7
435,153 + +0.6
435,153 + -1.4
435,154 - +1.8
435,154 - +1.0
435,154 - -1.2
435,244 - -0.2
435,447 + -2.6
435,747 + -0.3
436,092 + AZOBR_RS24060 0.14 -0.4
436,092 + AZOBR_RS24060 0.14 -0.8
436,092 + AZOBR_RS24060 0.14 -0.3
436,092 + AZOBR_RS24060 0.14 +0.2
436,092 + AZOBR_RS24060 0.14 +0.2
436,092 + AZOBR_RS24060 0.14 +0.8
436,092 + AZOBR_RS24060 0.14 -0.3
436,093 - AZOBR_RS24060 0.14 -0.2
436,093 - AZOBR_RS24060 0.14 +0.4
436,093 - AZOBR_RS24060 0.14 -0.0
436,093 - AZOBR_RS24060 0.14 -2.9
436,093 - AZOBR_RS24060 0.14 -1.7
436,093 - AZOBR_RS24060 0.14 +0.5
436,093 - AZOBR_RS24060 0.14 -0.1
436,093 - AZOBR_RS24060 0.14 +0.6
436,098 + AZOBR_RS24060 0.14 -0.8
436,098 + AZOBR_RS24060 0.14 -1.9
436,098 + AZOBR_RS24060 0.14 +0.1
436,098 + AZOBR_RS24060 0.14 +0.7
436,098 + AZOBR_RS24060 0.14 +0.9
436,098 + AZOBR_RS24060 0.14 -0.1
436,098 + AZOBR_RS24060 0.14 -0.6
436,098 + AZOBR_RS24060 0.14 -0.1
436,099 - AZOBR_RS24060 0.14 -0.1
436,099 - AZOBR_RS24060 0.14 -1.6
436,099 - AZOBR_RS24060 0.14 +0.2
436,099 - AZOBR_RS24060 0.14 -0.9
436,099 - AZOBR_RS24060 0.14 -3.5
436,099 - AZOBR_RS24060 0.14 +0.7
436,099 - AZOBR_RS24060 0.14 +0.1
436,099 - AZOBR_RS24060 0.14 +0.4
436,099 - AZOBR_RS24060 0.14 -0.6
436,099 - AZOBR_RS24060 0.14 +0.7
436,099 - AZOBR_RS24060 0.14 -1.0
436,099 - AZOBR_RS24060 0.14 +0.5
436,099 - AZOBR_RS24060 0.14 +0.3
436,099 - AZOBR_RS24060 0.14 +0.7
436,321 - AZOBR_RS24060 0.34 +0.4
436,321 - AZOBR_RS24060 0.34 +0.3
436,461 + AZOBR_RS24060 0.47 +0.4
436,461 + AZOBR_RS24060 0.47 +0.7
436,461 + AZOBR_RS24060 0.47 +0.1
436,461 + AZOBR_RS24060 0.47 +1.1
436,462 - AZOBR_RS24060 0.47 -0.3
436,462 - AZOBR_RS24060 0.47 -2.8
436,462 - +1.1
436,462 - AZOBR_RS24060 0.47 -1.9
436,524 + AZOBR_RS24060 0.53 -2.0
436,525 - AZOBR_RS24060 0.53 +0.1
436,525 - AZOBR_RS24060 0.53 -0.3
436,584 + AZOBR_RS24060 0.58 -0.2
436,585 - AZOBR_RS24060 0.58 -1.7
437,286 + -3.8
437,308 + -0.6
437,308 + -0.2
437,308 + +0.6
437,308 + +1.5
437,308 + +1.3
437,308 + +0.6
437,308 + -0.8
437,308 + -3.7
437,324 + -0.0
437,342 + +1.0
437,890 + AZOBR_RS24065 0.32 +0.1
437,891 - AZOBR_RS24065 0.32 -0.8
437,918 + AZOBR_RS24065 0.35 -5.0
437,919 - AZOBR_RS24065 0.35 -1.5
437,919 - AZOBR_RS24065 0.35 -0.7

Or see this region's nucleotide sequence