Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23865 and AZOBR_RS23870 are separated by 249 nucleotides AZOBR_RS23870 and AZOBR_RS23875 are separated by 105 nucleotides AZOBR_RS23875 and AZOBR_RS23880 are separated by 276 nucleotides
AZOBR_RS23865: AZOBR_RS23865 - hypothetical protein, at 385,598 to 386,206
_RS23865
AZOBR_RS23870: AZOBR_RS23870 - hypothetical protein, at 386,456 to 386,650
_RS23870
AZOBR_RS23875: AZOBR_RS23875 - hypothetical protein, at 386,756 to 388,597
_RS23875
AZOBR_RS23880: AZOBR_RS23880 - hydrolase, at 388,874 to 389,503
_RS23880
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.777 kb on - strand, within AZOBR_RS23865 at 385.777 kb on - strand, within AZOBR_RS23865 at 385.956 kb on + strand, within AZOBR_RS23865 at 385.957 kb on - strand, within AZOBR_RS23865 at 385.957 kb on - strand, within AZOBR_RS23865 at 386.223 kb on + strand at 386.223 kb on + strand at 386.272 kb on + strand at 386.272 kb on + strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.562 kb on - strand, within AZOBR_RS23870 at 386.564 kb on - strand, within AZOBR_RS23870 at 386.953 kb on - strand, within AZOBR_RS23875 at 387.099 kb on + strand, within AZOBR_RS23875 at 387.100 kb on - strand, within AZOBR_RS23875 at 387.100 kb on - strand, within AZOBR_RS23875 at 387.196 kb on + strand, within AZOBR_RS23875 at 387.196 kb on + strand, within AZOBR_RS23875 at 387.330 kb on + strand, within AZOBR_RS23875 at 387.330 kb on + strand, within AZOBR_RS23875 at 387.331 kb on - strand, within AZOBR_RS23875 at 387.513 kb on + strand, within AZOBR_RS23875 at 387.514 kb on - strand, within AZOBR_RS23875 at 387.514 kb on - strand, within AZOBR_RS23875 at 387.514 kb on - strand, within AZOBR_RS23875 at 387.759 kb on + strand, within AZOBR_RS23875 at 387.760 kb on - strand, within AZOBR_RS23875 at 387.859 kb on - strand, within AZOBR_RS23875 at 388.033 kb on + strand, within AZOBR_RS23875 at 388.344 kb on - strand, within AZOBR_RS23875 at 388.365 kb on + strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.467 kb on + strand at 388.685 kb on + strand at 388.686 kb on - strand at 388.686 kb on - strand at 388.784 kb on + strand at 388.784 kb on + strand at 388.785 kb on - strand at 388.785 kb on - strand at 388.790 kb on + strand at 388.791 kb on - strand at 388.791 kb on - strand at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.582 kb on + strand at 389.582 kb on + strand at 389.583 kb on - strand at 389.583 kb on - strand at 389.585 kb on + strand at 389.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 385,776 + AZOBR_RS23865 0.29 +0.4 385,776 + AZOBR_RS23865 0.29 -0.1 385,776 + AZOBR_RS23865 0.29 -2.3 385,776 + AZOBR_RS23865 0.29 +1.3 385,776 + AZOBR_RS23865 0.29 -0.2 385,777 - AZOBR_RS23865 0.29 +0.9 385,777 - AZOBR_RS23865 0.29 +0.5 385,956 + AZOBR_RS23865 0.59 -1.7 385,957 - AZOBR_RS23865 0.59 -0.0 385,957 - AZOBR_RS23865 0.59 -0.4 386,223 + -0.2 386,223 + -0.2 386,272 + +1.1 386,272 + +0.8 386,273 - +0.4 386,273 - -1.7 386,273 - -0.7 386,273 - -3.9 386,562 - AZOBR_RS23870 0.54 -3.6 386,564 - AZOBR_RS23870 0.55 -0.2 386,953 - AZOBR_RS23875 0.11 -0.0 387,099 + AZOBR_RS23875 0.19 +0.5 387,100 - AZOBR_RS23875 0.19 +0.6 387,100 - AZOBR_RS23875 0.19 -0.0 387,196 + AZOBR_RS23875 0.24 +0.5 387,196 + AZOBR_RS23875 0.24 +0.4 387,330 + AZOBR_RS23875 0.31 -0.8 387,330 + AZOBR_RS23875 0.31 -2.9 387,331 - AZOBR_RS23875 0.31 -0.8 387,513 + AZOBR_RS23875 0.41 +0.1 387,514 - AZOBR_RS23875 0.41 -1.1 387,514 - AZOBR_RS23875 0.41 +0.4 387,514 - AZOBR_RS23875 0.41 +0.3 387,759 + AZOBR_RS23875 0.54 -0.0 387,760 - AZOBR_RS23875 0.55 -1.1 387,859 - AZOBR_RS23875 0.60 -0.9 388,033 + AZOBR_RS23875 0.69 -0.3 388,344 - AZOBR_RS23875 0.86 -0.7 388,365 + AZOBR_RS23875 0.87 +0.2 388,366 - AZOBR_RS23875 0.87 -0.6 388,366 - AZOBR_RS23875 0.87 -0.3 388,366 - AZOBR_RS23875 0.87 -0.5 388,366 - AZOBR_RS23875 0.87 -2.2 388,366 - AZOBR_RS23875 0.87 -2.8 388,366 - AZOBR_RS23875 0.87 -0.3 388,467 + -1.4 388,685 + -1.7 388,686 - +1.0 388,686 - +0.2 388,784 + -0.7 388,784 + +1.3 388,785 - -0.3 388,785 - -0.2 388,790 + +0.5 388,791 - -1.9 388,791 - +0.0 389,193 + AZOBR_RS23880 0.51 -1.2 389,193 + AZOBR_RS23880 0.51 -2.9 389,193 + AZOBR_RS23880 0.51 +0.2 389,194 - AZOBR_RS23880 0.51 -0.7 389,194 - AZOBR_RS23880 0.51 -0.5 389,582 + +0.0 389,582 + +1.3 389,583 - -0.3 389,583 - -1.2 389,585 + -0.9 389,586 - -3.2
Or see this region's nucleotide sequence