Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23700

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23695 and AZOBR_RS23700 are separated by 47 nucleotidesAZOBR_RS23700 and AZOBR_RS23705 are separated by 203 nucleotides AZOBR_RS23695: AZOBR_RS23695 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 349,974 to 353,681 _RS23695 AZOBR_RS23700: AZOBR_RS23700 - hypothetical protein, at 353,729 to 353,917 _RS23700 AZOBR_RS23705: AZOBR_RS23705 - beta-lactamase, at 354,121 to 355,170 _RS23705 Position (kb) 353 354Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 352.954 kb on - strand, within AZOBR_RS23695at 352.954 kb on - strand, within AZOBR_RS23695at 352.954 kb on - strand, within AZOBR_RS23695at 353.049 kb on + strand, within AZOBR_RS23695at 353.134 kb on - strand, within AZOBR_RS23695at 353.190 kb on + strand, within AZOBR_RS23695at 353.256 kb on + strand, within AZOBR_RS23695at 353.256 kb on + strandat 353.730 kb on + strandat 354.238 kb on + strand, within AZOBR_RS23705at 354.262 kb on + strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.321 kb on - strand, within AZOBR_RS23705at 354.321 kb on - strand, within AZOBR_RS23705at 354.321 kb on - strand, within AZOBR_RS23705at 354.475 kb on + strand, within AZOBR_RS23705at 354.541 kb on + strand, within AZOBR_RS23705at 354.541 kb on + strand, within AZOBR_RS23705at 354.542 kb on - strand, within AZOBR_RS23705at 354.542 kb on - strand, within AZOBR_RS23705at 354.602 kb on - strand, within AZOBR_RS23705at 354.730 kb on + strand, within AZOBR_RS23705at 354.731 kb on - strand, within AZOBR_RS23705at 354.731 kb on - strand, within AZOBR_RS23705at 354.838 kb on + strand, within AZOBR_RS23705at 354.838 kb on + strand, within AZOBR_RS23705at 354.838 kb on + strand, within AZOBR_RS23705at 354.838 kb on + strand, within AZOBR_RS23705at 354.839 kb on - strand, within AZOBR_RS23705at 354.839 kb on - strand, within AZOBR_RS23705at 354.839 kb on - strand, within AZOBR_RS23705at 354.916 kb on + strand, within AZOBR_RS23705at 354.917 kb on - strand, within AZOBR_RS23705

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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352,954 - AZOBR_RS23695 0.80 -1.0
352,954 - AZOBR_RS23695 0.80 -1.7
352,954 - AZOBR_RS23695 0.80 +0.2
353,049 + AZOBR_RS23695 0.83 -0.6
353,134 - AZOBR_RS23695 0.85 -2.1
353,190 + AZOBR_RS23695 0.87 +0.8
353,256 + AZOBR_RS23695 0.89 -1.5
353,256 + +1.1
353,730 + -0.4
354,238 + AZOBR_RS23705 0.11 -2.1
354,262 + AZOBR_RS23705 0.13 +0.2
354,263 - AZOBR_RS23705 0.14 -0.1
354,263 - AZOBR_RS23705 0.14 -1.2
354,263 - AZOBR_RS23705 0.14 +1.2
354,263 - AZOBR_RS23705 0.14 +0.3
354,320 + AZOBR_RS23705 0.19 +0.4
354,320 + AZOBR_RS23705 0.19 +0.0
354,320 + AZOBR_RS23705 0.19 +0.8
354,320 + AZOBR_RS23705 0.19 +0.4
354,320 + AZOBR_RS23705 0.19 +1.1
354,320 + AZOBR_RS23705 0.19 +0.2
354,321 - AZOBR_RS23705 0.19 +1.4
354,321 - AZOBR_RS23705 0.19 -0.1
354,321 - AZOBR_RS23705 0.19 -3.0
354,475 + AZOBR_RS23705 0.34 -0.9
354,541 + AZOBR_RS23705 0.40 +0.5
354,541 + AZOBR_RS23705 0.40 +0.3
354,542 - AZOBR_RS23705 0.40 -2.7
354,542 - AZOBR_RS23705 0.40 +0.1
354,602 - AZOBR_RS23705 0.46 -4.5
354,730 + AZOBR_RS23705 0.58 +0.3
354,731 - AZOBR_RS23705 0.58 +0.6
354,731 - AZOBR_RS23705 0.58 -2.3
354,838 + AZOBR_RS23705 0.68 -1.1
354,838 + AZOBR_RS23705 0.68 -0.0
354,838 + AZOBR_RS23705 0.68 +1.1
354,838 + AZOBR_RS23705 0.68 +1.5
354,839 - AZOBR_RS23705 0.68 +1.1
354,839 - AZOBR_RS23705 0.68 +0.7
354,839 - AZOBR_RS23705 0.68 -1.5
354,916 + AZOBR_RS23705 0.76 +1.1
354,917 - AZOBR_RS23705 0.76 -1.2

Or see this region's nucleotide sequence