Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23045

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23040 and AZOBR_RS23045 are separated by 147 nucleotidesAZOBR_RS23045 and AZOBR_RS23050 are separated by 26 nucleotides AZOBR_RS23040: AZOBR_RS23040 - allantoate amidohydrolase, at 183,551 to 184,780 _RS23040 AZOBR_RS23045: AZOBR_RS23045 - acetylpolyamine aminohydrolase, at 184,928 to 185,989 _RS23045 AZOBR_RS23050: AZOBR_RS23050 - decarboxylase, at 186,016 to 187,563 _RS23050 Position (kb) 184 185 186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 184.106 kb on + strand, within AZOBR_RS23040at 184.197 kb on - strand, within AZOBR_RS23040at 184.635 kb on - strand, within AZOBR_RS23040at 184.779 kb on - strandat 185.435 kb on + strand, within AZOBR_RS23045at 185.561 kb on + strand, within AZOBR_RS23045at 185.615 kb on + strand, within AZOBR_RS23045at 185.799 kb on - strand, within AZOBR_RS23045at 185.799 kb on - strand, within AZOBR_RS23045at 186.164 kb on + strandat 186.704 kb on - strand, within AZOBR_RS23050at 186.704 kb on - strand, within AZOBR_RS23050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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184,106 + AZOBR_RS23040 0.45 -2.2
184,197 - AZOBR_RS23040 0.53 +0.7
184,635 - AZOBR_RS23040 0.88 -0.9
184,779 - -3.9
185,435 + AZOBR_RS23045 0.48 +2.4
185,561 + AZOBR_RS23045 0.60 +0.3
185,615 + AZOBR_RS23045 0.65 +0.5
185,799 - AZOBR_RS23045 0.82 -1.0
185,799 - AZOBR_RS23045 0.82 -0.2
186,164 + -0.5
186,704 - AZOBR_RS23050 0.44 -0.5
186,704 - AZOBR_RS23050 0.44 -3.0

Or see this region's nucleotide sequence