Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23035

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23030 and AZOBR_RS23035 are separated by 10 nucleotidesAZOBR_RS23035 and AZOBR_RS23040 are separated by 27 nucleotides AZOBR_RS23030: AZOBR_RS23030 - ABC transporter ATP-binding protein, at 180,898 to 182,562 _RS23030 AZOBR_RS23035: AZOBR_RS23035 - 2-dehydropantoate 2-reductase, at 182,573 to 183,523 _RS23035 AZOBR_RS23040: AZOBR_RS23040 - allantoate amidohydrolase, at 183,551 to 184,780 _RS23040 Position (kb) 182 183 184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 181.651 kb on + strand, within AZOBR_RS23030at 181.652 kb on - strand, within AZOBR_RS23030at 181.652 kb on - strand, within AZOBR_RS23030at 182.018 kb on - strand, within AZOBR_RS23030at 182.459 kb on - strandat 183.543 kb on + strandat 183.839 kb on + strand, within AZOBR_RS23040at 183.839 kb on + strand, within AZOBR_RS23040at 183.839 kb on + strand, within AZOBR_RS23040at 183.840 kb on - strand, within AZOBR_RS23040at 184.106 kb on + strand, within AZOBR_RS23040at 184.197 kb on - strand, within AZOBR_RS23040

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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181,651 + AZOBR_RS23030 0.45 -1.6
181,652 - AZOBR_RS23030 0.45 -0.5
181,652 - AZOBR_RS23030 0.45 -0.1
182,018 - AZOBR_RS23030 0.67 -1.2
182,459 - -3.8
183,543 + +0.6
183,839 + AZOBR_RS23040 0.23 -2.8
183,839 + AZOBR_RS23040 0.23 -0.9
183,839 + AZOBR_RS23040 0.23 +0.3
183,840 - AZOBR_RS23040 0.23 +1.4
184,106 + AZOBR_RS23040 0.45 -2.2
184,197 - AZOBR_RS23040 0.53 +0.7

Or see this region's nucleotide sequence