Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23020 and AZOBR_RS23025 are separated by 11 nucleotides AZOBR_RS23025 and AZOBR_RS23030 overlap by 1 nucleotides
AZOBR_RS23020: AZOBR_RS23020 - ABC transporter permease, at 179,049 to 180,029
_RS23020
AZOBR_RS23025: AZOBR_RS23025 - ABC transporter permease, at 180,041 to 180,898
_RS23025
AZOBR_RS23030: AZOBR_RS23030 - ABC transporter ATP-binding protein, at 180,898 to 182,562
_RS23030
Position (kb) 180
181 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 179.066 kb on - strand at 179.066 kb on - strand at 179.066 kb on - strand at 179.247 kb on + strand, within AZOBR_RS23020 at 179.248 kb on - strand, within AZOBR_RS23020 at 179.265 kb on + strand, within AZOBR_RS23020 at 179.265 kb on + strand, within AZOBR_RS23020 at 179.265 kb on + strand, within AZOBR_RS23020 at 179.265 kb on + strand, within AZOBR_RS23020 at 179.266 kb on - strand, within AZOBR_RS23020 at 179.266 kb on - strand, within AZOBR_RS23020 at 179.266 kb on - strand, within AZOBR_RS23020 at 179.266 kb on - strand, within AZOBR_RS23020 at 179.266 kb on - strand, within AZOBR_RS23020 at 179.266 kb on - strand, within AZOBR_RS23020 at 179.299 kb on - strand, within AZOBR_RS23020 at 179.299 kb on - strand, within AZOBR_RS23020 at 179.304 kb on + strand, within AZOBR_RS23020 at 179.584 kb on - strand, within AZOBR_RS23020 at 179.655 kb on + strand, within AZOBR_RS23020 at 179.655 kb on + strand, within AZOBR_RS23020 at 179.656 kb on - strand, within AZOBR_RS23020 at 179.656 kb on - strand, within AZOBR_RS23020 at 179.656 kb on - strand, within AZOBR_RS23020 at 179.656 kb on - strand, within AZOBR_RS23020 at 179.667 kb on + strand, within AZOBR_RS23020 at 179.667 kb on + strand, within AZOBR_RS23020 at 179.668 kb on - strand at 179.917 kb on - strand, within AZOBR_RS23020 at 179.917 kb on - strand, within AZOBR_RS23020 at 179.992 kb on - strand at 179.992 kb on - strand at 179.992 kb on - strand at 179.992 kb on - strand at 180.740 kb on + strand, within AZOBR_RS23025 at 180.740 kb on + strand, within AZOBR_RS23025 at 180.740 kb on + strand, within AZOBR_RS23025 at 180.740 kb on + strand, within AZOBR_RS23025 at 180.741 kb on - strand, within AZOBR_RS23025 at 180.741 kb on - strand, within AZOBR_RS23025 at 180.741 kb on - strand, within AZOBR_RS23025 at 181.259 kb on - strand, within AZOBR_RS23030 at 181.651 kb on + strand, within AZOBR_RS23030 at 181.652 kb on - strand, within AZOBR_RS23030 at 181.652 kb on - strand, within AZOBR_RS23030
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 179,066 - +0.2 179,066 - +0.1 179,066 - -3.5 179,247 + AZOBR_RS23020 0.20 -0.8 179,248 - AZOBR_RS23020 0.20 -0.5 179,265 + AZOBR_RS23020 0.22 +0.4 179,265 + AZOBR_RS23020 0.22 -2.4 179,265 + AZOBR_RS23020 0.22 -0.3 179,265 + AZOBR_RS23020 0.22 -0.6 179,266 - AZOBR_RS23020 0.22 +0.7 179,266 - AZOBR_RS23020 0.22 +0.4 179,266 - AZOBR_RS23020 0.22 +1.3 179,266 - AZOBR_RS23020 0.22 -1.4 179,266 - AZOBR_RS23020 0.22 -2.8 179,266 - AZOBR_RS23020 0.22 +0.7 179,299 - AZOBR_RS23020 0.25 +0.3 179,299 - AZOBR_RS23020 0.25 +1.0 179,304 + AZOBR_RS23020 0.26 +0.4 179,584 - AZOBR_RS23020 0.55 -0.6 179,655 + AZOBR_RS23020 0.62 +0.0 179,655 + AZOBR_RS23020 0.62 -0.4 179,656 - AZOBR_RS23020 0.62 -3.8 179,656 - AZOBR_RS23020 0.62 +1.0 179,656 - AZOBR_RS23020 0.62 -0.2 179,656 - AZOBR_RS23020 0.62 -1.5 179,667 + AZOBR_RS23020 0.63 +0.6 179,667 + AZOBR_RS23020 0.63 +0.5 179,668 - +1.1 179,917 - AZOBR_RS23020 0.88 -2.2 179,917 - AZOBR_RS23020 0.88 -0.6 179,992 - +0.6 179,992 - +0.6 179,992 - -0.0 179,992 - -3.2 180,740 + AZOBR_RS23025 0.81 +0.2 180,740 + AZOBR_RS23025 0.81 -0.6 180,740 + AZOBR_RS23025 0.81 -2.8 180,740 + AZOBR_RS23025 0.81 +2.4 180,741 - AZOBR_RS23025 0.82 -1.6 180,741 - AZOBR_RS23025 0.82 +0.5 180,741 - AZOBR_RS23025 0.82 +1.6 181,259 - AZOBR_RS23030 0.22 -0.8 181,651 + AZOBR_RS23030 0.45 -1.6 181,652 - AZOBR_RS23030 0.45 -0.5 181,652 - AZOBR_RS23030 0.45 -0.1
Or see this region's nucleotide sequence