Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22955 and AZOBR_RS22960 overlap by 49 nucleotides AZOBR_RS22960 and AZOBR_RS22965 are separated by 2 nucleotides AZOBR_RS22965 and AZOBR_RS22970 overlap by 14 nucleotides AZOBR_RS22970 and AZOBR_RS22975 are separated by 144 nucleotides
AZOBR_RS22955: AZOBR_RS22955 - oxidoreductase domain protein (fragment), at 162,219 to 164,045
_RS22955
AZOBR_RS22960: AZOBR_RS22960 - hypothetical protein, at 163,997 to 164,485
_RS22960
AZOBR_RS22965: AZOBR_RS22965 - hypothetical protein, at 164,488 to 165,747
_RS22965
AZOBR_RS22970: AZOBR_RS22970 - hypothetical protein, at 165,734 to 166,156
_RS22970
AZOBR_RS22975: AZOBR_RS22975 - glycosyl transferase group 1 (fragment), at 166,301 to 166,960
_RS22975
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 163.494 kb on + strand, within AZOBR_RS22955 at 163.495 kb on - strand, within AZOBR_RS22955 at 163.603 kb on - strand, within AZOBR_RS22955 at 163.665 kb on + strand, within AZOBR_RS22955 at 163.665 kb on + strand, within AZOBR_RS22955 at 163.666 kb on - strand, within AZOBR_RS22955 at 163.666 kb on - strand, within AZOBR_RS22955 at 163.666 kb on - strand, within AZOBR_RS22955 at 163.858 kb on - strand, within AZOBR_RS22955 at 164.192 kb on + strand, within AZOBR_RS22960 at 164.193 kb on - strand, within AZOBR_RS22960 at 164.193 kb on - strand, within AZOBR_RS22960 at 164.259 kb on - strand, within AZOBR_RS22960 at 164.357 kb on + strand, within AZOBR_RS22960 at 164.602 kb on + strand at 164.837 kb on - strand, within AZOBR_RS22965 at 164.929 kb on + strand, within AZOBR_RS22965 at 164.929 kb on + strand, within AZOBR_RS22965 at 164.930 kb on - strand, within AZOBR_RS22965 at 164.948 kb on + strand, within AZOBR_RS22965 at 165.401 kb on - strand, within AZOBR_RS22965 at 165.403 kb on + strand, within AZOBR_RS22965 at 165.404 kb on - strand, within AZOBR_RS22965 at 165.404 kb on - strand, within AZOBR_RS22965 at 165.404 kb on - strand, within AZOBR_RS22965 at 165.448 kb on + strand, within AZOBR_RS22965 at 165.449 kb on - strand, within AZOBR_RS22965 at 165.520 kb on + strand, within AZOBR_RS22965 at 165.544 kb on + strand, within AZOBR_RS22965 at 165.544 kb on + strand, within AZOBR_RS22965 at 165.544 kb on + strand, within AZOBR_RS22965 at 165.545 kb on - strand, within AZOBR_RS22965 at 165.545 kb on - strand, within AZOBR_RS22965 at 165.550 kb on + strand, within AZOBR_RS22965 at 165.551 kb on - strand, within AZOBR_RS22965 at 165.640 kb on + strand at 165.640 kb on + strand at 165.707 kb on - strand at 165.707 kb on - strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.709 kb on + strand at 165.710 kb on - strand at 165.710 kb on - strand at 166.183 kb on + strand at 166.183 kb on + strand at 166.183 kb on + strand at 166.183 kb on + strand at 166.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 163,494 + AZOBR_RS22955 0.70 -0.4 163,495 - AZOBR_RS22955 0.70 +1.3 163,603 - AZOBR_RS22955 0.76 +0.5 163,665 + AZOBR_RS22955 0.79 +1.1 163,665 + AZOBR_RS22955 0.79 -0.1 163,666 - AZOBR_RS22955 0.79 +0.2 163,666 - AZOBR_RS22955 0.79 +0.6 163,666 - AZOBR_RS22955 0.79 +1.6 163,858 - AZOBR_RS22955 0.90 -0.9 164,192 + AZOBR_RS22960 0.40 -2.8 164,193 - AZOBR_RS22960 0.40 -0.2 164,193 - AZOBR_RS22960 0.40 +0.2 164,259 - AZOBR_RS22960 0.54 +0.7 164,357 + AZOBR_RS22960 0.74 +1.0 164,602 + -0.2 164,837 - AZOBR_RS22965 0.28 +0.9 164,929 + AZOBR_RS22965 0.35 -2.1 164,929 + AZOBR_RS22965 0.35 -0.5 164,930 - AZOBR_RS22965 0.35 +0.3 164,948 + AZOBR_RS22965 0.37 -0.7 165,401 - AZOBR_RS22965 0.72 -0.0 165,403 + AZOBR_RS22965 0.73 -0.3 165,404 - AZOBR_RS22965 0.73 -0.4 165,404 - AZOBR_RS22965 0.73 -1.0 165,404 - AZOBR_RS22965 0.73 -0.7 165,448 + AZOBR_RS22965 0.76 -0.6 165,449 - AZOBR_RS22965 0.76 +0.0 165,520 + AZOBR_RS22965 0.82 +0.5 165,544 + AZOBR_RS22965 0.84 -0.9 165,544 + AZOBR_RS22965 0.84 +0.1 165,544 + AZOBR_RS22965 0.84 -0.7 165,545 - AZOBR_RS22965 0.84 +0.3 165,545 - AZOBR_RS22965 0.84 -0.8 165,550 + AZOBR_RS22965 0.84 -1.4 165,551 - AZOBR_RS22965 0.84 -2.7 165,640 + +1.3 165,640 + -0.8 165,707 - +0.3 165,707 - +0.6 165,709 + -0.4 165,709 + -1.5 165,709 + -0.5 165,709 + -0.5 165,709 + -2.6 165,710 - -0.5 165,710 - -0.3 166,183 + +0.9 166,183 + +0.6 166,183 + +0.1 166,183 + +0.1 166,184 - -0.4
Or see this region's nucleotide sequence