Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22510 and AZOBR_RS22515 are separated by 79 nucleotides AZOBR_RS22515 and AZOBR_RS22520 are separated by 196 nucleotides AZOBR_RS22520 and AZOBR_RS22525 are separated by 99 nucleotides
AZOBR_RS22510: AZOBR_RS22510 - LysR family transcriptional regulator, at 61,727 to 62,689
_RS22510
AZOBR_RS22515: AZOBR_RS22515 - membrane protein of unknown function, at 62,769 to 63,329
_RS22515
AZOBR_RS22520: AZOBR_RS22520 - hypothetical protein, at 63,526 to 63,918
_RS22520
AZOBR_RS22525: AZOBR_RS22525 - flavin-nucleotide-binding protein, at 64,018 to 64,743
_RS22525
Position (kb) 62
63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 62.276 kb on + strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.465 kb on + strand, within AZOBR_RS22510 at 62.466 kb on - strand, within AZOBR_RS22510 at 62.490 kb on - strand, within AZOBR_RS22510 at 62.549 kb on + strand, within AZOBR_RS22510 at 62.802 kb on + strand at 62.802 kb on + strand at 62.802 kb on + strand at 63.377 kb on + strand at 63.378 kb on - strand at 63.525 kb on + strand at 63.525 kb on + strand at 63.526 kb on - strand at 63.535 kb on - strand at 63.959 kb on - strand at 64.181 kb on + strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.182 kb on - strand, within AZOBR_RS22525 at 64.328 kb on + strand, within AZOBR_RS22525 at 64.329 kb on - strand, within AZOBR_RS22525
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 62,276 + AZOBR_RS22510 0.57 +1.7 62,277 - AZOBR_RS22510 0.57 -0.0 62,277 - AZOBR_RS22510 0.57 +0.6 62,465 + AZOBR_RS22510 0.77 -0.6 62,466 - AZOBR_RS22510 0.77 +0.1 62,490 - AZOBR_RS22510 0.79 -2.2 62,549 + AZOBR_RS22510 0.85 +0.7 62,802 + +0.0 62,802 + +0.1 62,802 + -0.5 63,377 + +0.1 63,378 - +1.0 63,525 + -2.6 63,525 + -0.1 63,526 - -3.8 63,535 - -0.5 63,959 - +0.0 64,181 + AZOBR_RS22525 0.22 -0.4 64,182 - AZOBR_RS22525 0.23 -0.5 64,182 - AZOBR_RS22525 0.23 -3.5 64,182 - AZOBR_RS22525 0.23 -4.6 64,182 - AZOBR_RS22525 0.23 -0.1 64,182 - AZOBR_RS22525 0.23 -2.5 64,328 + AZOBR_RS22525 0.43 +1.1 64,329 - AZOBR_RS22525 0.43 +1.0
Or see this region's nucleotide sequence