Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21775 and AZOBR_RS21780 are separated by 23 nucleotides AZOBR_RS21780 and AZOBR_RS21785 are separated by 25 nucleotides AZOBR_RS21785 and AZOBR_RS21790 are separated by 292 nucleotides
AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888
_RS21775
AZOBR_RS21780: AZOBR_RS21780 - peptide ABC transporter ATP-binding protein, at 1,661,912 to 1,662,892
_RS21780
AZOBR_RS21785: AZOBR_RS21785 - hypothetical protein, at 1,662,918 to 1,663,097
_RS21785
AZOBR_RS21790: AZOBR_RS21790 - hemerythrin, at 1,663,390 to 1,663,800
_RS21790
Position (kb) 1661
1662
1663 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1661.580 kb on + strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.644 kb on - strand, within AZOBR_RS21775 at 1661.844 kb on + strand at 1661.963 kb on + strand at 1661.964 kb on - strand at 1661.964 kb on - strand at 1663.030 kb on + strand, within AZOBR_RS21785 at 1663.031 kb on - strand, within AZOBR_RS21785 at 1663.140 kb on - strand at 1663.140 kb on - strand at 1663.550 kb on - strand, within AZOBR_RS21790 at 1663.766 kb on - strand at 1663.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,661,580 + AZOBR_RS21775 0.69 +1.0 1,661,581 - AZOBR_RS21775 0.69 -0.0 1,661,581 - AZOBR_RS21775 0.69 -0.9 1,661,644 - AZOBR_RS21775 0.75 +0.9 1,661,844 + -0.9 1,661,963 + +1.4 1,661,964 - +0.5 1,661,964 - +1.4 1,663,030 + AZOBR_RS21785 0.62 -1.9 1,663,031 - AZOBR_RS21785 0.63 -2.3 1,663,140 - +3.5 1,663,140 - +0.3 1,663,550 - AZOBR_RS21790 0.39 -0.7 1,663,766 - -0.2 1,663,799 - +0.7
Or see this region's nucleotide sequence