Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21765 and AZOBR_RS21770 are separated by 8 nucleotides AZOBR_RS21770 and AZOBR_RS21775 are separated by 8 nucleotides AZOBR_RS21775 and AZOBR_RS21780 are separated by 23 nucleotides
AZOBR_RS21765: AZOBR_RS21765 - peptide ABC transporter permease, at 1,658,945 to 1,659,955
_RS21765
AZOBR_RS21770: AZOBR_RS21770 - peptide ABC transporter, at 1,659,964 to 1,660,890
_RS21770
AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888
_RS21775
AZOBR_RS21780: AZOBR_RS21780 - peptide ABC transporter ATP-binding protein, at 1,661,912 to 1,662,892
_RS21780
Position (kb)
1660
1661
1662 Strain fitness (log2 ratio)
-1
0
1 at 1660.057 kb on + strand, within AZOBR_RS21770 at 1660.058 kb on - strand, within AZOBR_RS21770 at 1660.513 kb on + strand, within AZOBR_RS21770 at 1660.514 kb on - strand, within AZOBR_RS21770 at 1660.561 kb on + strand, within AZOBR_RS21770 at 1660.561 kb on + strand, within AZOBR_RS21770 at 1661.580 kb on + strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.581 kb on - strand, within AZOBR_RS21775 at 1661.644 kb on - strand, within AZOBR_RS21775 at 1661.844 kb on + strand at 1661.963 kb on + strand at 1661.964 kb on - strand at 1661.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,660,057 + AZOBR_RS21770 0.10 +0.1 1,660,058 - AZOBR_RS21770 0.10 -0.4 1,660,513 + AZOBR_RS21770 0.59 +1.1 1,660,514 - AZOBR_RS21770 0.59 +1.0 1,660,561 + AZOBR_RS21770 0.64 +0.2 1,660,561 + AZOBR_RS21770 0.64 +0.7 1,661,580 + AZOBR_RS21775 0.69 +1.0 1,661,581 - AZOBR_RS21775 0.69 -0.0 1,661,581 - AZOBR_RS21775 0.69 -0.9 1,661,644 - AZOBR_RS21775 0.75 +0.9 1,661,844 + -0.9 1,661,963 + +1.4 1,661,964 - +0.5 1,661,964 - +1.4
Or see this region's nucleotide sequence