Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21760 and AZOBR_RS21765 are separated by 132 nucleotides AZOBR_RS21765 and AZOBR_RS21770 are separated by 8 nucleotides AZOBR_RS21770 and AZOBR_RS21775 are separated by 8 nucleotides
AZOBR_RS21760: AZOBR_RS21760 - peptide ABC transporter substrate-binding protein, at 1,657,211 to 1,658,812
_RS21760
AZOBR_RS21765: AZOBR_RS21765 - peptide ABC transporter permease, at 1,658,945 to 1,659,955
_RS21765
AZOBR_RS21770: AZOBR_RS21770 - peptide ABC transporter, at 1,659,964 to 1,660,890
_RS21770
AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888
_RS21775
Position (kb)
1658
1659
1660 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1658.078 kb on + strand, within AZOBR_RS21760 at 1658.079 kb on - strand, within AZOBR_RS21760 at 1658.178 kb on - strand, within AZOBR_RS21760 at 1658.178 kb on - strand, within AZOBR_RS21760 at 1658.178 kb on - strand, within AZOBR_RS21760 at 1658.231 kb on + strand, within AZOBR_RS21760 at 1658.232 kb on - strand, within AZOBR_RS21760 at 1658.252 kb on + strand, within AZOBR_RS21760 at 1658.253 kb on - strand, within AZOBR_RS21760 at 1658.351 kb on + strand, within AZOBR_RS21760 at 1658.352 kb on - strand, within AZOBR_RS21760 at 1658.433 kb on - strand, within AZOBR_RS21760 at 1658.591 kb on + strand, within AZOBR_RS21760 at 1658.592 kb on - strand, within AZOBR_RS21760 at 1658.592 kb on - strand, within AZOBR_RS21760 at 1658.592 kb on - strand, within AZOBR_RS21760 at 1658.660 kb on + strand at 1658.661 kb on - strand at 1658.790 kb on - strand at 1658.810 kb on + strand at 1658.949 kb on + strand at 1658.949 kb on + strand at 1659.150 kb on - strand, within AZOBR_RS21765 at 1659.461 kb on + strand, within AZOBR_RS21765 at 1659.461 kb on + strand, within AZOBR_RS21765 at 1659.462 kb on - strand, within AZOBR_RS21765 at 1659.462 kb on - strand, within AZOBR_RS21765 at 1659.464 kb on + strand, within AZOBR_RS21765 at 1659.464 kb on + strand, within AZOBR_RS21765 at 1659.642 kb on - strand, within AZOBR_RS21765 at 1659.642 kb on - strand, within AZOBR_RS21765 at 1660.057 kb on + strand, within AZOBR_RS21770 at 1660.058 kb on - strand, within AZOBR_RS21770 at 1660.513 kb on + strand, within AZOBR_RS21770 at 1660.514 kb on - strand, within AZOBR_RS21770 at 1660.561 kb on + strand, within AZOBR_RS21770 at 1660.561 kb on + strand, within AZOBR_RS21770
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,658,078 + AZOBR_RS21760 0.54 -0.9 1,658,079 - AZOBR_RS21760 0.54 +0.1 1,658,178 - AZOBR_RS21760 0.60 +0.6 1,658,178 - AZOBR_RS21760 0.60 +0.6 1,658,178 - AZOBR_RS21760 0.60 +0.6 1,658,231 + AZOBR_RS21760 0.64 +0.1 1,658,232 - AZOBR_RS21760 0.64 +0.9 1,658,252 + AZOBR_RS21760 0.65 +1.2 1,658,253 - AZOBR_RS21760 0.65 +1.5 1,658,351 + AZOBR_RS21760 0.71 +1.6 1,658,352 - AZOBR_RS21760 0.71 +1.4 1,658,433 - AZOBR_RS21760 0.76 +1.4 1,658,591 + AZOBR_RS21760 0.86 +0.9 1,658,592 - AZOBR_RS21760 0.86 +0.8 1,658,592 - AZOBR_RS21760 0.86 +1.8 1,658,592 - AZOBR_RS21760 0.86 +0.0 1,658,660 + +1.9 1,658,661 - +1.5 1,658,790 - +1.4 1,658,810 + +1.7 1,658,949 + -0.7 1,658,949 + +0.4 1,659,150 - AZOBR_RS21765 0.20 +0.3 1,659,461 + AZOBR_RS21765 0.51 -0.2 1,659,461 + AZOBR_RS21765 0.51 +1.2 1,659,462 - AZOBR_RS21765 0.51 -0.7 1,659,462 - AZOBR_RS21765 0.51 +0.7 1,659,464 + AZOBR_RS21765 0.51 -2.0 1,659,464 + AZOBR_RS21765 0.51 +0.4 1,659,642 - AZOBR_RS21765 0.69 +0.6 1,659,642 - AZOBR_RS21765 0.69 -2.5 1,660,057 + AZOBR_RS21770 0.10 +0.1 1,660,058 - AZOBR_RS21770 0.10 -0.4 1,660,513 + AZOBR_RS21770 0.59 +1.1 1,660,514 - AZOBR_RS21770 0.59 +1.0 1,660,561 + AZOBR_RS21770 0.64 +0.2 1,660,561 + AZOBR_RS21770 0.64 +0.7
Or see this region's nucleotide sequence