Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21570 and AZOBR_RS21575 overlap by 4 nucleotides AZOBR_RS21575 and AZOBR_RS21580 are separated by 15 nucleotides AZOBR_RS21580 and AZOBR_RS21585 are separated by 7 nucleotides AZOBR_RS21585 and AZOBR_RS21590 are separated by 13 nucleotides
AZOBR_RS21570: AZOBR_RS21570 - N-acetylneuraminate synthase, at 1,616,129 to 1,617,181
_RS21570
AZOBR_RS21575: AZOBR_RS21575 - spore coat protein, at 1,617,178 to 1,617,936
_RS21575
AZOBR_RS21580: AZOBR_RS21580 - hypothetical protein, at 1,617,952 to 1,618,185
_RS21580
AZOBR_RS21585: AZOBR_RS21585 - alpha/beta hydrolase, at 1,618,193 to 1,619,011
_RS21585
AZOBR_RS21590: AZOBR_RS21590 - hypothetical protein, at 1,619,025 to 1,619,303
_RS21590
Position (kb) 1617
1618
1619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1617.002 kb on + strand, within AZOBR_RS21570 at 1617.003 kb on - strand, within AZOBR_RS21570 at 1617.696 kb on + strand, within AZOBR_RS21575 at 1617.697 kb on - strand, within AZOBR_RS21575 at 1617.700 kb on + strand, within AZOBR_RS21575 at 1618.260 kb on - strand at 1618.260 kb on - strand at 1618.514 kb on + strand, within AZOBR_RS21585 at 1618.514 kb on + strand, within AZOBR_RS21585 at 1618.514 kb on + strand, within AZOBR_RS21585 at 1618.515 kb on - strand at 1618.945 kb on + strand at 1618.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,617,002 + AZOBR_RS21570 0.83 -2.1 1,617,003 - AZOBR_RS21570 0.83 +2.1 1,617,696 + AZOBR_RS21575 0.68 -3.1 1,617,697 - AZOBR_RS21575 0.68 -3.0 1,617,700 + AZOBR_RS21575 0.69 -3.1 1,618,260 - -1.2 1,618,260 - +1.3 1,618,514 + AZOBR_RS21585 0.39 -0.7 1,618,514 + AZOBR_RS21585 0.39 +0.7 1,618,514 + AZOBR_RS21585 0.39 -0.2 1,618,515 - -0.7 1,618,945 + -0.3 1,618,946 - -1.9
Or see this region's nucleotide sequence