Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19675 and AZOBR_RS19680 are separated by 258 nucleotides AZOBR_RS19680 and AZOBR_RS19685 overlap by 4 nucleotides AZOBR_RS19685 and AZOBR_RS19690 are separated by 18 nucleotides
AZOBR_RS19675: AZOBR_RS19675 - CoA transferase, at 1,183,841 to 1,185,043
_RS19675
AZOBR_RS19680: AZOBR_RS19680 - membrane protein, at 1,185,302 to 1,186,228
_RS19680
AZOBR_RS19685: AZOBR_RS19685 - hypothetical protein, at 1,186,225 to 1,186,605
_RS19685
AZOBR_RS19690: AZOBR_RS19690 - hypothetical protein, at 1,186,624 to 1,187,934
_RS19690
Position (kb)
1185
1186
1187 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1184.375 kb on + strand, within AZOBR_RS19675 at 1184.376 kb on - strand, within AZOBR_RS19675 at 1184.495 kb on + strand, within AZOBR_RS19675 at 1184.495 kb on + strand, within AZOBR_RS19675 at 1184.495 kb on + strand, within AZOBR_RS19675 at 1184.496 kb on - strand, within AZOBR_RS19675 at 1184.555 kb on + strand, within AZOBR_RS19675 at 1184.669 kb on + strand, within AZOBR_RS19675 at 1184.912 kb on + strand, within AZOBR_RS19675 at 1185.108 kb on - strand at 1185.228 kb on + strand at 1185.229 kb on - strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.230 kb on + strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.231 kb on - strand at 1185.629 kb on + strand, within AZOBR_RS19680 at 1185.629 kb on + strand, within AZOBR_RS19680 at 1185.629 kb on + strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1185.630 kb on - strand, within AZOBR_RS19680 at 1186.047 kb on - strand, within AZOBR_RS19680 at 1186.352 kb on + strand, within AZOBR_RS19685 at 1186.352 kb on + strand, within AZOBR_RS19685 at 1186.352 kb on + strand, within AZOBR_RS19685 at 1186.523 kb on + strand, within AZOBR_RS19685 at 1186.586 kb on + strand at 1186.586 kb on + strand at 1186.587 kb on - strand at 1186.712 kb on + strand at 1186.792 kb on + strand, within AZOBR_RS19690
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,184,375 + AZOBR_RS19675 0.44 -1.7 1,184,376 - AZOBR_RS19675 0.44 +1.9 1,184,495 + AZOBR_RS19675 0.54 -0.4 1,184,495 + AZOBR_RS19675 0.54 +0.5 1,184,495 + AZOBR_RS19675 0.54 +0.2 1,184,496 - AZOBR_RS19675 0.54 +1.2 1,184,555 + AZOBR_RS19675 0.59 +2.0 1,184,669 + AZOBR_RS19675 0.69 -0.3 1,184,912 + AZOBR_RS19675 0.89 +0.4 1,185,108 - -0.4 1,185,228 + +0.4 1,185,229 - +0.1 1,185,230 + +0.4 1,185,230 + +2.1 1,185,230 + -1.8 1,185,230 + -1.2 1,185,230 + -0.4 1,185,230 + +3.1 1,185,230 + +0.7 1,185,231 - -0.5 1,185,231 - +0.3 1,185,231 - +0.0 1,185,231 - +0.4 1,185,231 - +0.5 1,185,231 - +0.6 1,185,231 - +2.6 1,185,231 - +1.2 1,185,231 - -2.0 1,185,231 - -1.7 1,185,629 + AZOBR_RS19680 0.35 -0.1 1,185,629 + AZOBR_RS19680 0.35 -3.7 1,185,629 + AZOBR_RS19680 0.35 -1.1 1,185,630 - AZOBR_RS19680 0.35 +0.0 1,185,630 - AZOBR_RS19680 0.35 +1.6 1,185,630 - AZOBR_RS19680 0.35 +0.5 1,185,630 - AZOBR_RS19680 0.35 -0.6 1,185,630 - AZOBR_RS19680 0.35 -3.7 1,185,630 - AZOBR_RS19680 0.35 -2.9 1,185,630 - AZOBR_RS19680 0.35 -1.0 1,186,047 - AZOBR_RS19680 0.80 +0.9 1,186,352 + AZOBR_RS19685 0.33 -0.0 1,186,352 + AZOBR_RS19685 0.33 +0.6 1,186,352 + AZOBR_RS19685 0.33 -2.5 1,186,523 + AZOBR_RS19685 0.78 -3.0 1,186,586 + +0.8 1,186,586 + +0.8 1,186,587 - -1.0 1,186,712 + +0.5 1,186,792 + AZOBR_RS19690 0.13 +0.3
Or see this region's nucleotide sequence