Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18535 and AZOBR_RS18540 are separated by 102 nucleotides AZOBR_RS18540 and AZOBR_RS18545 are separated by 194 nucleotides AZOBR_RS18545 and AZOBR_RS18550 are separated by 19 nucleotides
AZOBR_RS18535: AZOBR_RS18535 - LysR family transcriptional regulator, at 927,352 to 928,260
_RS18535
AZOBR_RS18540: AZOBR_RS18540 - endoribonuclease L-PSP, at 928,363 to 928,761
_RS18540
AZOBR_RS18545: AZOBR_RS18545 - putative two-component response regulator:antitermination factor NasT, at 928,956 to 929,573
_RS18545
AZOBR_RS18550: AZOBR_RS18550 - ABC transporter for nitrate, ATPase component <small>(from data)</small>, at 929,593 to 931,257
_RS18550
Position (kb) 928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 927.440 kb on + strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.536 kb on + strand, within AZOBR_RS18535 at 927.536 kb on + strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 928.324 kb on + strand at 928.325 kb on - strand at 928.325 kb on - strand at 928.423 kb on + strand, within AZOBR_RS18540 at 929.047 kb on + strand, within AZOBR_RS18545 at 929.660 kb on + strand at 929.661 kb on - strand at 929.664 kb on - strand at 929.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 927,440 + -1.4 927,441 - +0.6 927,441 - +1.1 927,441 - -0.0 927,441 - +0.9 927,536 + AZOBR_RS18535 0.20 -0.0 927,536 + AZOBR_RS18535 0.20 -0.1 927,537 - AZOBR_RS18535 0.20 +0.0 927,537 - AZOBR_RS18535 0.20 -1.0 927,537 - AZOBR_RS18535 0.20 +1.2 927,653 + AZOBR_RS18535 0.33 -1.1 927,653 + AZOBR_RS18535 0.33 -2.6 928,324 + -3.4 928,325 - -0.6 928,325 - -0.3 928,423 + AZOBR_RS18540 0.15 -1.5 929,047 + AZOBR_RS18545 0.15 +1.0 929,660 + +3.9 929,661 - +1.6 929,664 - -3.5 929,725 - +0.7
Or see this region's nucleotide sequence