Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18370 and AZOBR_RS18375 are separated by 316 nucleotides AZOBR_RS18375 and AZOBR_RS18380 are separated by 239 nucleotides AZOBR_RS18380 and AZOBR_RS18385 are separated by 52 nucleotides
AZOBR_RS18370: AZOBR_RS18370 - aspartate decarboxylase, at 886,071 to 886,505
_RS18370
AZOBR_RS18375: AZOBR_RS18375 - chemotaxis protein, at 886,822 to 887,127
_RS18375
AZOBR_RS18380: AZOBR_RS18380 - chemotaxis protein, at 887,367 to 888,833
_RS18380
AZOBR_RS18385: AZOBR_RS18385 - hypothetical protein, at 888,886 to 889,461
_RS18385
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.394 kb on - strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.445 kb on - strand, within AZOBR_RS18370 at 886.445 kb on - strand, within AZOBR_RS18370 at 886.485 kb on - strand at 886.635 kb on + strand at 886.673 kb on - strand at 886.737 kb on + strand at 886.738 kb on - strand at 886.740 kb on + strand at 886.740 kb on + strand at 886.741 kb on - strand at 886.786 kb on - strand at 886.849 kb on + strand at 886.849 kb on + strand at 886.849 kb on + strand at 886.850 kb on - strand at 887.047 kb on + strand, within AZOBR_RS18375 at 887.048 kb on - strand, within AZOBR_RS18375 at 887.449 kb on - strand at 887.530 kb on - strand at 887.572 kb on - strand, within AZOBR_RS18380 at 887.739 kb on + strand, within AZOBR_RS18380 at 887.740 kb on - strand at 887.740 kb on - strand, within AZOBR_RS18380 at 887.740 kb on - strand, within AZOBR_RS18380 at 888.003 kb on + strand at 888.058 kb on - strand, within AZOBR_RS18380 at 888.253 kb on - strand, within AZOBR_RS18380 at 888.622 kb on - strand at 888.652 kb on - strand, within AZOBR_RS18380 at 888.652 kb on - strand, within AZOBR_RS18380 at 888.652 kb on - strand, within AZOBR_RS18380 at 889.090 kb on + strand, within AZOBR_RS18385 at 889.587 kb on + strand at 889.587 kb on + strand at 889.588 kb on - strand at 889.588 kb on - strand at 889.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 886,393 + AZOBR_RS18370 0.74 +0.3 886,393 + AZOBR_RS18370 0.74 +0.5 886,393 + AZOBR_RS18370 0.74 -1.6 886,394 - AZOBR_RS18370 0.74 -0.4 886,444 + AZOBR_RS18370 0.86 -0.3 886,444 + AZOBR_RS18370 0.86 -2.2 886,444 + AZOBR_RS18370 0.86 -0.1 886,444 + AZOBR_RS18370 0.86 +0.5 886,445 - AZOBR_RS18370 0.86 +0.2 886,445 - AZOBR_RS18370 0.86 +0.1 886,485 - +0.4 886,635 + -1.2 886,673 - +3.1 886,737 + -0.4 886,738 - +1.3 886,740 + -2.0 886,740 + -0.5 886,741 - +3.4 886,786 - +2.5 886,849 + +1.3 886,849 + +0.2 886,849 + +1.1 886,850 - +3.3 887,047 + AZOBR_RS18375 0.74 +1.6 887,048 - AZOBR_RS18375 0.74 +1.3 887,449 - +0.5 887,530 - -1.6 887,572 - AZOBR_RS18380 0.14 +1.7 887,739 + AZOBR_RS18380 0.25 +1.1 887,740 - +1.6 887,740 - AZOBR_RS18380 0.25 +1.1 887,740 - AZOBR_RS18380 0.25 +0.1 888,003 + +1.0 888,058 - AZOBR_RS18380 0.47 +1.0 888,253 - AZOBR_RS18380 0.60 -2.7 888,622 - -0.0 888,652 - AZOBR_RS18380 0.88 +2.9 888,652 - AZOBR_RS18380 0.88 +0.1 888,652 - AZOBR_RS18380 0.88 +0.6 889,090 + AZOBR_RS18385 0.35 -1.4 889,587 + +2.0 889,587 + +1.0 889,588 - +1.0 889,588 - -1.0 889,732 - -0.8
Or see this region's nucleotide sequence