Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18230 and AZOBR_RS18235 are separated by 399 nucleotides AZOBR_RS18235 and AZOBR_RS18240 are separated by 209 nucleotides AZOBR_RS18240 and AZOBR_RS18245 are separated by 9 nucleotides
AZOBR_RS18230: AZOBR_RS18230 - hypothetical protein, at 855,012 to 857,963
_RS18230
AZOBR_RS18235: AZOBR_RS18235 - hypothetical protein, at 858,363 to 858,860
_RS18235
AZOBR_RS18240: AZOBR_RS18240 - hypothetical protein, at 859,070 to 859,831
_RS18240
AZOBR_RS18245: AZOBR_RS18245 - putative fused multidrug transport subunits of ABC superfamily transporter: permease component/ATP-binding component, at 859,841 to 861,565
_RS18245
Position (kb) 858
859 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 857.377 kb on - strand, within AZOBR_RS18230 at 857.517 kb on + strand, within AZOBR_RS18230 at 858.066 kb on + strand at 858.067 kb on - strand at 858.067 kb on - strand at 858.077 kb on + strand at 858.110 kb on + strand at 858.111 kb on - strand at 858.349 kb on + strand at 858.350 kb on - strand at 858.384 kb on + strand at 858.393 kb on + strand at 858.393 kb on + strand at 858.393 kb on + strand at 858.394 kb on - strand at 858.394 kb on - strand at 858.394 kb on - strand at 858.476 kb on + strand, within AZOBR_RS18235 at 858.477 kb on - strand, within AZOBR_RS18235 at 858.492 kb on + strand, within AZOBR_RS18235 at 858.492 kb on + strand, within AZOBR_RS18235 at 858.918 kb on + strand at 858.919 kb on - strand at 858.981 kb on + strand at 858.981 kb on + strand at 858.982 kb on - strand at 859.206 kb on - strand, within AZOBR_RS18240 at 859.211 kb on + strand, within AZOBR_RS18240 at 859.211 kb on + strand, within AZOBR_RS18240 at 859.212 kb on - strand, within AZOBR_RS18240 at 859.212 kb on - strand, within AZOBR_RS18240 at 859.212 kb on - strand, within AZOBR_RS18240 at 859.391 kb on + strand, within AZOBR_RS18240 at 859.392 kb on - strand, within AZOBR_RS18240 at 859.392 kb on - strand, within AZOBR_RS18240 at 859.392 kb on - strand, within AZOBR_RS18240 at 859.544 kb on + strand, within AZOBR_RS18240 at 859.545 kb on - strand, within AZOBR_RS18240 at 859.545 kb on - strand, within AZOBR_RS18240 at 859.715 kb on + strand, within AZOBR_RS18240 at 859.715 kb on + strand, within AZOBR_RS18240 at 859.715 kb on + strand, within AZOBR_RS18240 at 859.716 kb on - strand, within AZOBR_RS18240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 857,377 - AZOBR_RS18230 0.80 -0.7 857,517 + AZOBR_RS18230 0.85 -1.2 858,066 + +1.1 858,067 - -0.0 858,067 - +0.6 858,077 + -1.0 858,110 + -0.1 858,111 - -4.5 858,349 + -0.3 858,350 - +0.1 858,384 + +0.7 858,393 + +1.0 858,393 + -1.8 858,393 + -0.3 858,394 - +0.6 858,394 - -0.8 858,394 - -1.1 858,476 + AZOBR_RS18235 0.23 +1.7 858,477 - AZOBR_RS18235 0.23 +0.6 858,492 + AZOBR_RS18235 0.26 -0.3 858,492 + AZOBR_RS18235 0.26 +0.0 858,918 + +0.4 858,919 - -0.0 858,981 + +1.1 858,981 + -0.2 858,982 - -1.0 859,206 - AZOBR_RS18240 0.18 +0.0 859,211 + AZOBR_RS18240 0.19 +1.3 859,211 + AZOBR_RS18240 0.19 +0.0 859,212 - AZOBR_RS18240 0.19 -0.9 859,212 - AZOBR_RS18240 0.19 +0.1 859,212 - AZOBR_RS18240 0.19 -0.7 859,391 + AZOBR_RS18240 0.42 -0.3 859,392 - AZOBR_RS18240 0.42 -0.4 859,392 - AZOBR_RS18240 0.42 -0.4 859,392 - AZOBR_RS18240 0.42 -0.9 859,544 + AZOBR_RS18240 0.62 +1.6 859,545 - AZOBR_RS18240 0.62 -4.7 859,545 - AZOBR_RS18240 0.62 -0.6 859,715 + AZOBR_RS18240 0.85 +1.0 859,715 + AZOBR_RS18240 0.85 +0.1 859,715 + AZOBR_RS18240 0.85 -2.5 859,716 - AZOBR_RS18240 0.85 -1.8
Or see this region's nucleotide sequence