Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18225

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18220 and AZOBR_RS18225 are separated by 14 nucleotidesAZOBR_RS18225 and AZOBR_RS18230 are separated by 291 nucleotides AZOBR_RS18220: AZOBR_RS18220 - conserved membrane protein of unknown function, at 851,236 to 854,322 _RS18220 AZOBR_RS18225: AZOBR_RS18225 - hypothetical protein, at 854,337 to 854,720 _RS18225 AZOBR_RS18230: AZOBR_RS18230 - hypothetical protein, at 855,012 to 857,963 _RS18230 Position (kb) 854 855Strain fitness (log2 ratio) -2 -1 0 1at 853.984 kb on + strand, within AZOBR_RS18220at 853.984 kb on + strand, within AZOBR_RS18220at 853.987 kb on + strand, within AZOBR_RS18220at 853.987 kb on + strand, within AZOBR_RS18220at 853.988 kb on - strand, within AZOBR_RS18220at 853.988 kb on - strand, within AZOBR_RS18220at 853.988 kb on - strand, within AZOBR_RS18220at 854.140 kb on + strandat 854.167 kb on + strandat 854.496 kb on + strand, within AZOBR_RS18225at 854.782 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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853,984 + AZOBR_RS18220 0.89 -0.3
853,984 + AZOBR_RS18220 0.89 -1.3
853,987 + AZOBR_RS18220 0.89 +1.3
853,987 + AZOBR_RS18220 0.89 +0.9
853,988 - AZOBR_RS18220 0.89 -0.9
853,988 - AZOBR_RS18220 0.89 -0.1
853,988 - AZOBR_RS18220 0.89 -2.1
854,140 + +0.1
854,167 + +0.1
854,496 + AZOBR_RS18225 0.41 -0.9
854,782 + -0.4

Or see this region's nucleotide sequence