Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18150 and AZOBR_RS18155 are separated by 61 nucleotides AZOBR_RS18155 and AZOBR_RS18160 are separated by 70 nucleotides AZOBR_RS18160 and AZOBR_RS18165 are separated by 46 nucleotides
AZOBR_RS18150: AZOBR_RS18150 - membrane protein, at 829,837 to 830,988
_RS18150
AZOBR_RS18155: AZOBR_RS18155 - enoyl-CoA hydratase, at 831,050 to 831,796
_RS18155
AZOBR_RS18160: AZOBR_RS18160 - fumarylacetoacetate hydrolase, at 831,867 to 833,012
_RS18160
AZOBR_RS18165: AZOBR_RS18165 - 2 5-dioxovalerate dehydrogenase, at 833,059 to 834,639
_RS18165
Position (kb) 831
832
833
834 Strain fitness (log2 ratio) -1
0
1 at 830.951 kb on - strand at 831.278 kb on + strand, within AZOBR_RS18155 at 831.278 kb on + strand, within AZOBR_RS18155 at 831.278 kb on + strand, within AZOBR_RS18155 at 831.332 kb on + strand, within AZOBR_RS18155 at 831.695 kb on + strand, within AZOBR_RS18155 at 831.794 kb on + strand at 832.347 kb on + strand, within AZOBR_RS18160 at 832.348 kb on - strand, within AZOBR_RS18160 at 833.810 kb on - strand, within AZOBR_RS18165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 830,951 - +0.6 831,278 + AZOBR_RS18155 0.31 +1.0 831,278 + AZOBR_RS18155 0.31 +0.1 831,278 + AZOBR_RS18155 0.31 +0.2 831,332 + AZOBR_RS18155 0.38 -1.6 831,695 + AZOBR_RS18155 0.86 -0.2 831,794 + +0.4 832,347 + AZOBR_RS18160 0.42 +1.3 832,348 - AZOBR_RS18160 0.42 +0.6 833,810 - AZOBR_RS18165 0.48 -0.5
Or see this region's nucleotide sequence