Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15890 and AZOBR_RS15895 are separated by 182 nucleotides AZOBR_RS15895 and AZOBR_RS15900 are separated by 172 nucleotides AZOBR_RS15900 and AZOBR_RS15905 are separated by 156 nucleotides
AZOBR_RS15890: AZOBR_RS15890 - DNA topoisomerase I, at 317,792 to 320,671
_RS15890
AZOBR_RS15895: AZOBR_RS15895 - hypothetical protein, at 320,854 to 321,075
_RS15895
AZOBR_RS15900: AZOBR_RS15900 - hypothetical protein, at 321,248 to 321,706
_RS15900
AZOBR_RS15905: AZOBR_RS15905 - 2-hydroxyhepta-2 4-diene-1 7-dioate isomerase, at 321,863 to 322,714
_RS15905
Position (kb) 321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.285 kb on + strand, within AZOBR_RS15890 at 320.285 kb on + strand, within AZOBR_RS15890 at 320.286 kb on - strand, within AZOBR_RS15890 at 320.307 kb on - strand, within AZOBR_RS15890 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.935 kb on + strand, within AZOBR_RS15895 at 320.936 kb on - strand, within AZOBR_RS15895 at 321.082 kb on - strand at 321.082 kb on - strand at 321.171 kb on + strand at 321.504 kb on + strand, within AZOBR_RS15900 at 321.504 kb on + strand, within AZOBR_RS15900 at 321.505 kb on - strand, within AZOBR_RS15900 at 321.687 kb on + strand at 321.707 kb on - strand at 321.748 kb on + strand at 321.748 kb on + strand at 321.749 kb on - strand at 321.857 kb on - strand at 322.101 kb on - strand, within AZOBR_RS15905 at 322.538 kb on + strand, within AZOBR_RS15905 at 322.538 kb on + strand, within AZOBR_RS15905 at 322.539 kb on - strand, within AZOBR_RS15905
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 320,285 + AZOBR_RS15890 0.87 -2.3 320,285 + AZOBR_RS15890 0.87 -1.9 320,286 - AZOBR_RS15890 0.87 -2.3 320,307 - AZOBR_RS15890 0.87 -1.1 320,935 + AZOBR_RS15895 0.36 +0.4 320,935 + AZOBR_RS15895 0.36 +2.1 320,935 + AZOBR_RS15895 0.36 +0.1 320,936 - AZOBR_RS15895 0.37 +0.9 321,082 - +1.0 321,082 - -0.0 321,171 + +0.6 321,504 + AZOBR_RS15900 0.56 +0.8 321,504 + AZOBR_RS15900 0.56 -2.8 321,505 - AZOBR_RS15900 0.56 -3.0 321,687 + -1.9 321,707 - -0.3 321,748 + +0.6 321,748 + +0.3 321,749 - +0.6 321,857 - -2.0 322,101 - AZOBR_RS15905 0.28 -0.7 322,538 + AZOBR_RS15905 0.79 -2.1 322,538 + AZOBR_RS15905 0.79 -1.3 322,539 - AZOBR_RS15905 0.79 +0.9
Or see this region's nucleotide sequence