Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12245

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12240 and AZOBR_RS12245 are separated by 270 nucleotidesAZOBR_RS12245 and AZOBR_RS12250 are separated by 124 nucleotides AZOBR_RS12240: AZOBR_RS12240 - 2-hydroxy-acid oxidase, at 2,567,974 to 2,569,377 _RS12240 AZOBR_RS12245: AZOBR_RS12245 - 5-oxoprolinase, at 2,569,648 to 2,573,256 _RS12245 AZOBR_RS12250: AZOBR_RS12250 - GCN5 family acetyltransferase, at 2,573,381 to 2,573,935 _RS12250 Position (kb) 2569 2570 2571 2572 2573 2574Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2568.713 kb on + strand, within AZOBR_RS12240at 2568.786 kb on - strand, within AZOBR_RS12240at 2569.245 kb on - strandat 2569.245 kb on - strandat 2569.245 kb on - strandat 2569.245 kb on - strandat 2569.425 kb on - strandat 2569.439 kb on + strandat 2569.439 kb on + strandat 2569.586 kb on - strandat 2569.586 kb on - strandat 2569.611 kb on + strandat 2570.069 kb on + strand, within AZOBR_RS12245at 2570.069 kb on + strand, within AZOBR_RS12245at 2570.069 kb on + strand, within AZOBR_RS12245at 2570.070 kb on - strand, within AZOBR_RS12245at 2570.073 kb on - strand, within AZOBR_RS12245at 2570.309 kb on + strand, within AZOBR_RS12245at 2570.310 kb on - strand, within AZOBR_RS12245at 2570.828 kb on + strand, within AZOBR_RS12245at 2570.829 kb on - strand, within AZOBR_RS12245at 2570.829 kb on - strand, within AZOBR_RS12245at 2570.907 kb on - strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.924 kb on + strand, within AZOBR_RS12245at 2570.925 kb on - strand, within AZOBR_RS12245at 2570.925 kb on - strand, within AZOBR_RS12245at 2570.925 kb on - strand, within AZOBR_RS12245at 2571.092 kb on + strand, within AZOBR_RS12245at 2571.093 kb on - strand, within AZOBR_RS12245at 2571.709 kb on - strand, within AZOBR_RS12245at 2571.709 kb on - strand, within AZOBR_RS12245at 2571.908 kb on + strand, within AZOBR_RS12245at 2571.908 kb on + strand, within AZOBR_RS12245at 2571.909 kb on - strand, within AZOBR_RS12245at 2571.909 kb on - strand, within AZOBR_RS12245at 2572.191 kb on - strand, within AZOBR_RS12245at 2572.352 kb on + strand, within AZOBR_RS12245at 2572.352 kb on + strand, within AZOBR_RS12245at 2572.353 kb on - strand, within AZOBR_RS12245at 2572.353 kb on - strand, within AZOBR_RS12245at 2572.353 kb on - strand, within AZOBR_RS12245at 2572.580 kb on + strand, within AZOBR_RS12245at 2572.580 kb on + strand, within AZOBR_RS12245at 2572.604 kb on + strand, within AZOBR_RS12245at 2572.605 kb on - strand, within AZOBR_RS12245at 2572.605 kb on - strand, within AZOBR_RS12245at 2572.784 kb on + strand, within AZOBR_RS12245at 2572.884 kb on - strand, within AZOBR_RS12245at 2573.314 kb on - strandat 2573.314 kb on - strandat 2573.314 kb on - strandat 2573.417 kb on + strandat 2574.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,568,713 + AZOBR_RS12240 0.53 +0.1
2,568,786 - AZOBR_RS12240 0.58 -3.5
2,569,245 - -0.8
2,569,245 - -2.0
2,569,245 - +0.9
2,569,245 - +0.5
2,569,425 - +0.6
2,569,439 + +0.6
2,569,439 + -0.5
2,569,586 - +0.5
2,569,586 - +0.1
2,569,611 + -1.1
2,570,069 + AZOBR_RS12245 0.12 -0.6
2,570,069 + AZOBR_RS12245 0.12 +1.3
2,570,069 + AZOBR_RS12245 0.12 -1.1
2,570,070 - AZOBR_RS12245 0.12 +1.7
2,570,073 - AZOBR_RS12245 0.12 -0.7
2,570,309 + AZOBR_RS12245 0.18 +0.6
2,570,310 - AZOBR_RS12245 0.18 +0.7
2,570,828 + AZOBR_RS12245 0.33 +0.4
2,570,829 - AZOBR_RS12245 0.33 -0.7
2,570,829 - AZOBR_RS12245 0.33 +1.7
2,570,907 - AZOBR_RS12245 0.35 -3.4
2,570,924 + AZOBR_RS12245 0.35 -2.5
2,570,924 + AZOBR_RS12245 0.35 +1.1
2,570,924 + AZOBR_RS12245 0.35 +0.5
2,570,924 + AZOBR_RS12245 0.35 +0.5
2,570,924 + AZOBR_RS12245 0.35 +0.0
2,570,924 + AZOBR_RS12245 0.35 -1.0
2,570,924 + AZOBR_RS12245 0.35 +0.8
2,570,924 + AZOBR_RS12245 0.35 +0.2
2,570,925 - AZOBR_RS12245 0.35 +0.1
2,570,925 - AZOBR_RS12245 0.35 -2.1
2,570,925 - AZOBR_RS12245 0.35 +0.3
2,571,092 + AZOBR_RS12245 0.40 +0.9
2,571,093 - AZOBR_RS12245 0.40 +0.4
2,571,709 - AZOBR_RS12245 0.57 +0.1
2,571,709 - AZOBR_RS12245 0.57 +0.1
2,571,908 + AZOBR_RS12245 0.63 +0.2
2,571,908 + AZOBR_RS12245 0.63 +0.1
2,571,909 - AZOBR_RS12245 0.63 -0.6
2,571,909 - AZOBR_RS12245 0.63 +0.4
2,572,191 - AZOBR_RS12245 0.70 +0.8
2,572,352 + AZOBR_RS12245 0.75 -4.0
2,572,352 + AZOBR_RS12245 0.75 +0.9
2,572,353 - AZOBR_RS12245 0.75 +1.0
2,572,353 - AZOBR_RS12245 0.75 -3.6
2,572,353 - AZOBR_RS12245 0.75 -0.4
2,572,580 + AZOBR_RS12245 0.81 +0.6
2,572,580 + AZOBR_RS12245 0.81 -0.3
2,572,604 + AZOBR_RS12245 0.82 +1.7
2,572,605 - AZOBR_RS12245 0.82 +0.3
2,572,605 - AZOBR_RS12245 0.82 +0.2
2,572,784 + AZOBR_RS12245 0.87 +0.9
2,572,884 - AZOBR_RS12245 0.90 -0.8
2,573,314 - -0.3
2,573,314 - +0.8
2,573,314 - +0.6
2,573,417 + -0.7
2,574,192 - +0.3

Or see this region's nucleotide sequence