Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS12080 and AZOBR_RS12085 are separated by 843 nucleotides AZOBR_RS12085 and AZOBR_RS12090 are separated by 147 nucleotides AZOBR_RS12090 and AZOBR_RS12095 are separated by 72 nucleotides
AZOBR_RS12080: AZOBR_RS12080 - hypothetical protein, at 2,539,178 to 2,539,471
_RS12080
AZOBR_RS12085: AZOBR_RS12085 - chitooligosaccharide deacetylase, at 2,540,315 to 2,540,908
_RS12085
AZOBR_RS12090: AZOBR_RS12090 - hypothetical protein, at 2,541,056 to 2,541,451
_RS12090
AZOBR_RS12095: AZOBR_RS12095 - hypothetical protein, at 2,541,524 to 2,541,733
_RS12095
Position (kb)
2540
2541 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2539.342 kb on - strand, within AZOBR_RS12080 at 2539.342 kb on - strand, within AZOBR_RS12080 at 2539.342 kb on - strand, within AZOBR_RS12080 at 2540.223 kb on - strand at 2540.223 kb on - strand at 2540.445 kb on - strand, within AZOBR_RS12085 at 2540.813 kb on + strand, within AZOBR_RS12085 at 2540.813 kb on + strand, within AZOBR_RS12085 at 2541.057 kb on + strand at 2541.057 kb on + strand at 2541.058 kb on - strand at 2541.086 kb on + strand at 2541.087 kb on - strand at 2541.087 kb on - strand at 2541.087 kb on - strand at 2541.087 kb on - strand at 2541.087 kb on - strand at 2541.090 kb on + strand at 2541.090 kb on + strand at 2541.090 kb on + strand at 2541.090 kb on + strand at 2541.090 kb on + strand at 2541.091 kb on - strand at 2541.091 kb on - strand at 2541.091 kb on - strand at 2541.471 kb on + strand at 2541.471 kb on + strand at 2541.472 kb on - strand at 2541.483 kb on + strand at 2541.484 kb on - strand at 2541.484 kb on - strand at 2541.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,539,342 - AZOBR_RS12080 0.56 -0.4 2,539,342 - AZOBR_RS12080 0.56 +0.3 2,539,342 - AZOBR_RS12080 0.56 +1.0 2,540,223 - +1.4 2,540,223 - +1.1 2,540,445 - AZOBR_RS12085 0.22 +1.3 2,540,813 + AZOBR_RS12085 0.84 -0.0 2,540,813 + AZOBR_RS12085 0.84 +1.1 2,541,057 + +1.4 2,541,057 + -0.2 2,541,058 - +0.8 2,541,086 + -0.7 2,541,087 - -0.9 2,541,087 - -0.1 2,541,087 - -1.0 2,541,087 - +0.7 2,541,087 - +1.0 2,541,090 + -3.1 2,541,090 + -2.4 2,541,090 + -1.1 2,541,090 + +1.6 2,541,090 + -2.4 2,541,091 - +0.8 2,541,091 - -1.4 2,541,091 - -2.5 2,541,471 + -0.6 2,541,471 + +1.2 2,541,472 - +0.7 2,541,483 + -1.9 2,541,484 - +0.8 2,541,484 - +0.5 2,541,844 - -0.3
Or see this region's nucleotide sequence