Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12085

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12080 and AZOBR_RS12085 are separated by 843 nucleotidesAZOBR_RS12085 and AZOBR_RS12090 are separated by 147 nucleotidesAZOBR_RS12090 and AZOBR_RS12095 are separated by 72 nucleotides AZOBR_RS12080: AZOBR_RS12080 - hypothetical protein, at 2,539,178 to 2,539,471 _RS12080 AZOBR_RS12085: AZOBR_RS12085 - chitooligosaccharide deacetylase, at 2,540,315 to 2,540,908 _RS12085 AZOBR_RS12090: AZOBR_RS12090 - hypothetical protein, at 2,541,056 to 2,541,451 _RS12090 AZOBR_RS12095: AZOBR_RS12095 - hypothetical protein, at 2,541,524 to 2,541,733 _RS12095 Position (kb) 2540 2541Strain fitness (log2 ratio) -3 -2 -1 0 1at 2539.342 kb on - strand, within AZOBR_RS12080at 2539.342 kb on - strand, within AZOBR_RS12080at 2539.342 kb on - strand, within AZOBR_RS12080at 2540.223 kb on - strandat 2540.223 kb on - strandat 2540.445 kb on - strand, within AZOBR_RS12085at 2540.813 kb on + strand, within AZOBR_RS12085at 2540.813 kb on + strand, within AZOBR_RS12085at 2541.057 kb on + strandat 2541.057 kb on + strandat 2541.058 kb on - strandat 2541.086 kb on + strandat 2541.087 kb on - strandat 2541.087 kb on - strandat 2541.087 kb on - strandat 2541.087 kb on - strandat 2541.087 kb on - strandat 2541.090 kb on + strandat 2541.090 kb on + strandat 2541.090 kb on + strandat 2541.090 kb on + strandat 2541.090 kb on + strandat 2541.091 kb on - strandat 2541.091 kb on - strandat 2541.091 kb on - strandat 2541.471 kb on + strandat 2541.471 kb on + strandat 2541.472 kb on - strandat 2541.483 kb on + strandat 2541.484 kb on - strandat 2541.484 kb on - strandat 2541.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,539,342 - AZOBR_RS12080 0.56 -0.4
2,539,342 - AZOBR_RS12080 0.56 +0.3
2,539,342 - AZOBR_RS12080 0.56 +1.0
2,540,223 - +1.4
2,540,223 - +1.1
2,540,445 - AZOBR_RS12085 0.22 +1.3
2,540,813 + AZOBR_RS12085 0.84 -0.0
2,540,813 + AZOBR_RS12085 0.84 +1.1
2,541,057 + +1.4
2,541,057 + -0.2
2,541,058 - +0.8
2,541,086 + -0.7
2,541,087 - -0.9
2,541,087 - -0.1
2,541,087 - -1.0
2,541,087 - +0.7
2,541,087 - +1.0
2,541,090 + -3.1
2,541,090 + -2.4
2,541,090 + -1.1
2,541,090 + +1.6
2,541,090 + -2.4
2,541,091 - +0.8
2,541,091 - -1.4
2,541,091 - -2.5
2,541,471 + -0.6
2,541,471 + +1.2
2,541,472 - +0.7
2,541,483 + -1.9
2,541,484 - +0.8
2,541,484 - +0.5
2,541,844 - -0.3

Or see this region's nucleotide sequence