Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10245 and AZOBR_RS10250 are separated by 268 nucleotides AZOBR_RS10250 and AZOBR_RS10255 overlap by 26 nucleotides AZOBR_RS10255 and AZOBR_RS10260 are separated by 200 nucleotides
AZOBR_RS10245: AZOBR_RS10245 - diguanylate cyclase, at 2,140,587 to 2,142,209
_RS10245
AZOBR_RS10250: AZOBR_RS10250 - chemotaxis protein, at 2,142,478 to 2,143,029
_RS10250
AZOBR_RS10255: AZOBR_RS10255 - hypothetical protein, at 2,143,004 to 2,144,311
_RS10255
AZOBR_RS10260: AZOBR_RS10260 - hypothetical protein, at 2,144,512 to 2,147,739
_RS10260
Position (kb)
2143
2144
2145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2142.108 kb on + strand at 2142.359 kb on + strand at 2142.373 kb on + strand at 2142.373 kb on + strand at 2142.376 kb on + strand at 2142.380 kb on + strand at 2142.381 kb on - strand at 2142.406 kb on - strand at 2142.406 kb on - strand at 2142.500 kb on + strand at 2142.500 kb on + strand at 2142.500 kb on + strand at 2142.501 kb on - strand at 2142.501 kb on - strand at 2142.501 kb on - strand at 2142.501 kb on - strand at 2142.501 kb on - strand at 2142.586 kb on + strand, within AZOBR_RS10250 at 2142.688 kb on + strand, within AZOBR_RS10250 at 2142.689 kb on - strand, within AZOBR_RS10250 at 2142.689 kb on - strand, within AZOBR_RS10250 at 2142.736 kb on + strand, within AZOBR_RS10250 at 2142.736 kb on + strand, within AZOBR_RS10250 at 2142.737 kb on - strand, within AZOBR_RS10250 at 2142.769 kb on + strand, within AZOBR_RS10250 at 2142.841 kb on + strand, within AZOBR_RS10250 at 2142.842 kb on - strand, within AZOBR_RS10250 at 2142.898 kb on + strand, within AZOBR_RS10250 at 2142.899 kb on - strand, within AZOBR_RS10250 at 2142.899 kb on - strand, within AZOBR_RS10250 at 2143.004 kb on - strand at 2143.004 kb on - strand at 2143.027 kb on + strand at 2143.082 kb on + strand at 2143.083 kb on - strand at 2143.083 kb on - strand at 2143.367 kb on + strand, within AZOBR_RS10255 at 2143.368 kb on - strand, within AZOBR_RS10255 at 2143.368 kb on - strand, within AZOBR_RS10255 at 2143.370 kb on + strand, within AZOBR_RS10255 at 2144.363 kb on + strand at 2144.364 kb on - strand at 2144.364 kb on - strand at 2144.873 kb on + strand, within AZOBR_RS10260 at 2144.873 kb on + strand, within AZOBR_RS10260 at 2144.873 kb on + strand, within AZOBR_RS10260 at 2144.873 kb on + strand, within AZOBR_RS10260 at 2144.874 kb on - strand, within AZOBR_RS10260
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,142,108 + +0.9 2,142,359 + +0.5 2,142,373 + -0.2 2,142,373 + -2.4 2,142,376 + +0.3 2,142,380 + +1.0 2,142,381 - -1.9 2,142,406 - +0.8 2,142,406 - -1.9 2,142,500 + -0.2 2,142,500 + +2.5 2,142,500 + +0.4 2,142,501 - -0.5 2,142,501 - +0.9 2,142,501 - -0.1 2,142,501 - +0.4 2,142,501 - -1.2 2,142,586 + AZOBR_RS10250 0.20 +0.8 2,142,688 + AZOBR_RS10250 0.38 -0.8 2,142,689 - AZOBR_RS10250 0.38 -2.4 2,142,689 - AZOBR_RS10250 0.38 -1.9 2,142,736 + AZOBR_RS10250 0.47 +0.3 2,142,736 + AZOBR_RS10250 0.47 +0.6 2,142,737 - AZOBR_RS10250 0.47 +0.9 2,142,769 + AZOBR_RS10250 0.53 -0.0 2,142,841 + AZOBR_RS10250 0.66 +0.5 2,142,842 - AZOBR_RS10250 0.66 -1.1 2,142,898 + AZOBR_RS10250 0.76 -0.7 2,142,899 - AZOBR_RS10250 0.76 +2.0 2,142,899 - AZOBR_RS10250 0.76 -2.1 2,143,004 - -0.9 2,143,004 - +1.5 2,143,027 + -2.9 2,143,082 + -0.1 2,143,083 - -2.6 2,143,083 - -2.6 2,143,367 + AZOBR_RS10255 0.28 -0.5 2,143,368 - AZOBR_RS10255 0.28 -0.1 2,143,368 - AZOBR_RS10255 0.28 +1.2 2,143,370 + AZOBR_RS10255 0.28 +0.8 2,144,363 + -0.6 2,144,364 - +1.6 2,144,364 - -1.0 2,144,873 + AZOBR_RS10260 0.11 -2.4 2,144,873 + AZOBR_RS10260 0.11 -0.3 2,144,873 + AZOBR_RS10260 0.11 -0.1 2,144,873 + AZOBR_RS10260 0.11 -2.1 2,144,874 - AZOBR_RS10260 0.11 -0.2
Or see this region's nucleotide sequence